View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19644_low_10 (Length: 237)
Name: NF19644_low_10
Description: NF19644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19644_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45863225 - 45863003
Alignment:
| Q |
1 |
agtcgagaaaccttatcgagattaaagtcacaaaagaccttagatgtatgtttgactaatgatttaatttgattaagaattttcaaaggaaatttgttaa |
100 |
Q |
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| T |
45863225 |
agtcgagaaaccttattgagattaacgtcacaaaagaccttagatgtatgtttgactaatgatttaatttgattaagaattttcaaaggaaatttgttaa |
45863126 |
T |
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| Q |
101 |
ctgannnnnnnnn--atcatttcaagtcttccatataaactattacgagactttgaagtaattattgcaaaacctaacttagctgcttaacaacaaatcc |
198 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45863125 |
ctgatttttttttttatcatttcaagtcttccatataaactattacgagactttgaagtaattattgcaaaacctaacttagctgcttaacaacaaatcc |
45863026 |
T |
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| Q |
199 |
aatccaagaaattatcttgagag |
221 |
Q |
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||||||| ||||||||||||||| |
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| T |
45863025 |
aatccaacaaattatcttgagag |
45863003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 41415319 - 41415257
Alignment:
| Q |
9 |
aaccttatcgagattaaagtcacaaaagaccttagatgtatgtttgactaatgatttaatttg |
71 |
Q |
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| T |
41415319 |
aaccttatcgagactagagtcacaaaacaccttagatgtatgcttgactaaggatttaatttg |
41415257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 29978988 - 29979042
Alignment:
| Q |
26 |
agtcacaaaagaccttagatgtatgtttgactaatgatttaatttgattaagaat |
80 |
Q |
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|||||||||| ||||||||| |||| |||| ||||||||||||||||| |||||| |
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| T |
29978988 |
agtcacaaaataccttagatttatgcttgattaatgatttaatttgataaagaat |
29979042 |
T |
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