View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19644_low_2 (Length: 533)
Name: NF19644_low_2
Description: NF19644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19644_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 191 - 516
Target Start/End: Complemental strand, 45182159 - 45181846
Alignment:
| Q |
191 |
gatatagtacaaattacgcatattatgcttcctccttctcctcttcgtgagttcaaagatatttatcttgtttttgagttgatggactctgatttacatc |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45182159 |
gatatagtacaaattacgcatattatgcttcctccttctcctcgtcgtgagttcaaagatatttatcttgtttttgagttgatggactctgatttacatc |
45182060 |
T |
|
| Q |
291 |
aagtcatcaaggcaaataatgaccttactcctgatcatcacaagtttttcttgtaccaacttcttcgaggcataaataaaatatatacattcaggtatcc |
390 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45182059 |
aag--------gcaaataatgaccttactcctgatcatcacaagtttttcttgtaccaacttcttcgaggcataaa----atatatacattcaggtatcc |
45181972 |
T |
|
| Q |
391 |
atcattaattataatcacttcacttcctttattattttagatagtaaactcatgtatctatttcattttggactggctcgagcatcatttagcgacactg |
490 |
Q |
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| T |
45181971 |
atcattaattataatcacttcacttcctttattattttagatattaaactcatgtatctatttcattttggactggctcgagcatcatttagcgacactg |
45181872 |
T |
|
| Q |
491 |
catctactatatactggactgtaagt |
516 |
Q |
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|||||||||||||||||||||||||| |
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| T |
45181871 |
catctactatatactggactgtaagt |
45181846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 45182277 - 45182163
Alignment:
| Q |
16 |
atcattggaaaaggaagttatggtgttgtcagctctgcaatcgacactcttactaatcaaaaagttgctatcaagaaaatcaacaatgtttttgagcata |
115 |
Q |
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| T |
45182277 |
atcattggaaaaggaagttatggtgttgtcagctctgcaatcgacactcttactaataaaaaagttgctatcaagaaaatcaacaatgtttttgagcata |
45182178 |
T |
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| Q |
116 |
caacagagatgccat |
130 |
Q |
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||||||||||||||| |
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| T |
45182177 |
caacagagatgccat |
45182163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 361
Target Start/End: Complemental strand, 45175510 - 45175184
Alignment:
| Q |
16 |
atcattggaaaaggaagttatggtgttgtcagctctgcaatcgacactcttactaatcaaaaagttgctatcaagaaaatcaacaatgtttttgagcata |
115 |
Q |
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|||||||||||||||||||||||||||||| | |||||||| ||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
45175510 |
atcattggaaaaggaagttatggtgttgtctgttctgcaattgacactcatactggccaaaaagttgctatcaagaaaattaaccatgtttttgagcatg |
45175411 |
T |
|
| Q |
116 |
caacagagatgccatgccatacggatcctaagagaaatcaagctcctgcgcttgctccaagtccaacatcatcctgatatagtacaaattacgcatatta |
215 |
Q |
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| | | | |||| || ||||||||||||||||||||| ||||||||||| || ||||||||||| || |||||| |||||||| |
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| T |
45175410 |
tatctg-------acgccacccgtatcctaagagaaatcaagctcttgcgcttgctc--ag-------gcatcctgatattgttgaaattaggcatatta |
45175327 |
T |
|
| Q |
216 |
tgcttcctccttctcctcttcgtgagttcaaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatgacct |
315 |
Q |
| |
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|||||||||||| | | |||||||| | ||||| ||| |||| |||||||||||||| |||||| |||||||||| || ||||||||| |||| || |
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| T |
45175326 |
tgcttcctcctt---cacgccgtgagtttagggatatctatgttgtctttgagttgatggaatctgatctacatcaagtaattaaggcaaatcatgatct |
45175230 |
T |
|
| Q |
316 |
tactcctgatcatcacaagtttttcttgtaccaacttcttcgaggc |
361 |
Q |
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||||||| | || ||| | ||||||||||| |||||||| |||||| |
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| T |
45175229 |
tactcctcagcaccaccaatttttcttgtatcaacttctccgaggc |
45175184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 48725013 - 48725084
Alignment:
| Q |
242 |
ttcaaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatgac |
313 |
Q |
| |
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||||||||||| ||| |||||||||| | ||||| || |||||||||||||||||||| |||||| ||||| |
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| T |
48725013 |
ttcaaagatatatatgttgtttttgaacttatggaatcagatttacatcaagtcatcaaagcaaatgatgac |
48725084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 361
Target Start/End: Original strand, 15160986 - 15161069
Alignment:
| Q |
278 |
tctgatttacatcaagtcatcaaggcaaataatgaccttactcctgatcatcacaagtttttcttgtaccaacttcttcgaggc |
361 |
Q |
| |
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|||||| ||||||| || || |||||||||||||| ||||||| || || ||||| | |||| | |||||||||||||||||| |
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| T |
15160986 |
tctgatgtacatcatgtaattaaggcaaataatgatcttactctagaccaccacaaatatttcctctaccaacttcttcgaggc |
15161069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 361
Target Start/End: Complemental strand, 7253216 - 7253097
Alignment:
| Q |
242 |
ttcaaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatgaccttactcctgatcatcacaagtttttct |
341 |
Q |
| |
|
||||||||||| ||| |||| ||||| | ||||| |||||||||||||| |||||||| |||||| |||| || || || || ||| || |||||||| |
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| T |
7253216 |
ttcaaagatatatatgttgtatttgaactcatggaatctgatttacatcaggtcatcaaagcaaatgatgatctgacaccagagcattaccagtttttcc |
7253117 |
T |
|
| Q |
342 |
tgtaccaacttcttcgaggc |
361 |
Q |
| |
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| || || ||||| |||||| |
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| T |
7253116 |
tctatcagcttctacgaggc |
7253097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 30813281 - 30813349
Alignment:
| Q |
245 |
aaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatgac |
313 |
Q |
| |
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|||||||||||| |||| |||||| | ||||| |||||| | |||||||||||||| || ||| ||||| |
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| T |
30813281 |
aaagatatttatgttgtctttgagctcatggagtctgatctccatcaagtcatcaaagctaatgatgac |
30813349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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