View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19644_low_4 (Length: 423)
Name: NF19644_low_4
Description: NF19644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19644_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 423
Target Start/End: Complemental strand, 6359447 - 6359038
Alignment:
| Q |
14 |
tactcgtgaatttgagtgactggtgtgtgctgatgacaatcacaatgatggtgccaacaacgaaggtattgctgctggtgttgttggaggcagctgatgt |
113 |
Q |
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| T |
6359447 |
tacttgtgaatttgagtgactggtgtgtgctgatgacaatcacaatgatggtgccaacaacgaaggtattgctgctggtgttgttggaggcagctgatgt |
6359348 |
T |
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| Q |
114 |
acaatgattatgagtggaaaaacgaagggattaggttattggatcgagatttctgtaaagcttgaaggtatcaaacaatatatttaataacgaaataata |
213 |
Q |
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| T |
6359347 |
acaacgattatgagtggaaaaacgaagggattaggttattggatcgagatttctgtaatgcttgaaggtatcaaacaatatatttaataacgaaataata |
6359248 |
T |
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| Q |
214 |
acagtagtagatagagagaattacaaggacgagcttaaattcaaaatgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatg |
313 |
Q |
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| T |
6359247 |
acagtagtaaatagagagaattacaaggacgagcttaaattcaaaacgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatg |
6359148 |
T |
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| Q |
314 |
gatatagcttcttgataatctgcatatactcaaggatctgacttcatcgacataaactgtaaatcaatttcatttgtacatggatcaaagaatatacaga |
413 |
Q |
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| T |
6359147 |
gatatagcttcttgataatctgcatatactcaaggatctgacttcatcgacataaactgtaaatcaatttcatttgtacatggatcaaagaatatacaga |
6359048 |
T |
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| Q |
414 |
aagggtaaga |
423 |
Q |
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| T |
6359047 |
aagggtaaga |
6359038 |
T |
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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 32857285 - 32857393
Alignment:
| Q |
285 |
tttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatactcaaggatctgacttcatcgacataaactgtaaatcaatttc |
384 |
Q |
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| T |
32857285 |
tttgcagtttctcaatcattttatggatggaaatagcttcatgagaatctacatatagtcaaggatttgacttcatggatataaacagcaaatcaatttc |
32857384 |
T |
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| Q |
385 |
atttgtaca |
393 |
Q |
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| T |
32857385 |
atttgtaca |
32857393 |
T |
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