View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19645_high_14 (Length: 332)
Name: NF19645_high_14
Description: NF19645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19645_high_14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 4160588 - 4160906
Alignment:
| Q |
13 |
atgaatggtttaattgcatcagaatgactgggttgggcgcattacctatattaaattgttacaaaagtcgcaagggaatatctgtaagttattttaaata |
112 |
Q |
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| T |
4160588 |
atgaatggtttaattgcatccgaatgactgggttgggcgcattgcctatattaaattgttacaaaagtcgcaagggaatatctgtaagttattttaaata |
4160687 |
T |
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| Q |
113 |
nnnnnnnnnnncgtatcttattttcattcaagactatagtaataatattcacttatttatgtctaacatattaacagattgaacaaaaatttgctaagga |
212 |
Q |
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| T |
4160688 |
tatttttttt-cgtatcttattttcattcaagactatagtaataatattcatttatttatgtttaacatattaacagattgaacaaaaatttgctaagga |
4160786 |
T |
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| Q |
213 |
aactgctcagcttaatcctcctcatacatttgttccatgggtggttgtcaacaaccatgcacttcaagaggtttgtgattgataatatttgattaaatgt |
312 |
Q |
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| T |
4160787 |
aactgctcagcttaatcctcctcatacatttgttccatgggtggttgtcaacaaccatgcacttcaagaggtttgtgattgataatatttgattaaatgt |
4160886 |
T |
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| Q |
313 |
taaagtaattaatatacttg |
332 |
Q |
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| T |
4160887 |
taaagtagttaatatacttg |
4160906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 4155662 - 4155786
Alignment:
| Q |
165 |
ttatttatgtctaacatattaacagattgaacaaaaatttgctaaggaaactgctcagcttaatcctcctcatacatttgttccatgggtggttgtcaac |
264 |
Q |
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| T |
4155662 |
ttatttatgtctaaaata---acagattgaacaaaaatatgctaaggaaactgctcaacttaatcctcctcatagatttgttccatgggtggttgtcaat |
4155758 |
T |
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| Q |
265 |
aaccatgcacttcaagaggtttgtgatt |
292 |
Q |
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| T |
4155759 |
aaccatgcacttcaagaggtttgtgatt |
4155786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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