View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19645_high_2 (Length: 378)
Name: NF19645_high_2
Description: NF19645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19645_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 139 - 349
Target Start/End: Original strand, 49082847 - 49083057
Alignment:
| Q |
139 |
acagattatcatgcctcctcaaaacataacatttccacagaataaacttgatgttgctgcagaaaccaatgctgcaagcaatcattctagtggttccgtg |
238 |
Q |
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| T |
49082847 |
acagattaccatgcctcctcaaaatataacatttccacagaataaacttgatgttgctgcagaaaacaatgctgcaagcaatcattctagtggttctgtg |
49082946 |
T |
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| Q |
239 |
gcttccacacacaaaaatattgaatgcagtgnnnnnnntagtgagcctcatgtaagttttgcctatgcacgccatctaaatttcactgaagcagtgtaat |
338 |
Q |
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| T |
49082947 |
gcttccacacacaaaaatattgaatgcagtgaaaaaaatagtgagcctcatgtaagttttgcctatgcacgccatctaaatttcactgaagcagtgtaat |
49083046 |
T |
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| Q |
339 |
aggattgttag |
349 |
Q |
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||||||||||| |
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| T |
49083047 |
aggattgttag |
49083057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 49082741 - 49082812
Alignment:
| Q |
17 |
gaacctgtggcagcatgtgtggagaagaaatactactgtatgccaatgtcaatatacttacttatattccaatccaac |
94 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
49082741 |
gaacttgtggcagcatgtgtggagaagaaatactactgt------atgtcaatatacttatttatattccaatccaac |
49082812 |
T |
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