View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19645_high_20 (Length: 322)

Name: NF19645_high_20
Description: NF19645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19645_high_20
NF19645_high_20
[»] scaffold0145 (1 HSPs)
scaffold0145 (26-316)||(12552-12841)
[»] chr4 (6 HSPs)
chr4 (26-316)||(16284876-16285165)
chr4 (159-316)||(18231449-18231604)
chr4 (159-315)||(11555916-11556070)
chr4 (189-302)||(11098355-11098468)
chr4 (34-148)||(11098243-11098356)
chr4 (35-109)||(15890295-15890368)
[»] chr6 (5 HSPs)
chr6 (83-316)||(10641216-10641449)
chr6 (34-316)||(14970060-14970343)
chr6 (161-316)||(10906699-10906854)
chr6 (159-275)||(9191065-9191181)
chr6 (34-112)||(19547185-19547262)
[»] chr5 (2 HSPs)
chr5 (31-316)||(24831871-24832161)
chr5 (165-300)||(13935715-13935849)
[»] chr3 (7 HSPs)
chr3 (31-316)||(14481471-14481761)
chr3 (35-250)||(17790941-17791155)
chr3 (35-250)||(19099381-19099595)
chr3 (166-226)||(22159871-22159931)
chr3 (55-117)||(5943813-5943874)
chr3 (166-226)||(21975275-21975335)
chr3 (166-226)||(21997706-21997766)
[»] chr7 (5 HSPs)
chr7 (159-315)||(22614701-22614857)
chr7 (34-316)||(20025970-20026251)
chr7 (159-316)||(11655474-11655631)
chr7 (201-302)||(13477489-13477596)
chr7 (88-260)||(4531649-4531820)
[»] chr2 (3 HSPs)
chr2 (63-303)||(44586336-44586574)
chr2 (34-192)||(24786268-24786425)
chr2 (165-250)||(16862347-16862432)
[»] scaffold1001 (1 HSPs)
scaffold1001 (159-316)||(1389-1545)
[»] chr1 (1 HSPs)
chr1 (165-278)||(1567041-1567154)


Alignment Details
Target: scaffold0145 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 26 - 316
Target Start/End: Complemental strand, 12841 - 12552
Alignment:
Q  26 atcaggggataaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgttagcataga 125  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| |||||||    
T  12841 atcagaggataaagtatatagaaggccttgaatagatgagagaatagagtacgtct-gtgagatgaatactaaaataaaataaatggatgttggcataga 12743  T
Q  126 atgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagag 225  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12742 atgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactatgacagagag 12643  T
Q  226 taatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12642 taatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttatattataataatgatgagaatgatgatgtc 12552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 26 - 316
Target Start/End: Original strand, 16284876 - 16285165
Alignment:
Q  26 atcaggggataaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgttagcataga 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| |||||||    
T  16284876 atcaggggataaagtatatagaaggccttgaatagatgagagaatagagtacgtct-gtgagatgaatactaaaataaaataaatggatgttggcataga 16284974  T
Q  126 atgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagag 225  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  16284975 atgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagtggatgataaagagtaatgatggggagtcctataactatgacagagag 16285074  T
Q  226 taatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16285075 taatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttatattataataatgatgagaatgatgatgtc 16285165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 159 - 316
Target Start/End: Original strand, 18231449 - 18231604
Alignment:
Q  159 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 258  Q
    |||||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| |||||||||||||||||||||||    
T  18231449 gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattaatattatatatatgtaaagaa 18231546  T
Q  259 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 316  Q
    ||||||||||| | |||||||||  || ||||||||||||||||||||||| ||||||    
T  18231547 attactacgatagaaaatgatgatgttatattataataatgatgagaatgacgatgtc 18231604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 159 - 315
Target Start/End: Complemental strand, 11556070 - 11555916
Alignment:
Q  159 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 258  Q
    ||||||||||||||||||  || ||||| ||||||||||||  || ||| ||| || | ||| ||||| ||||||| |||||||||||||||||||||||    
T  11556070 gataaggtggtgatataaatggttgatagagagtaatgatgatgaatcc-ata-ctgtcacaaagagtgatgacgattaatattatatatatgtaaagaa 11555973  T
Q  259 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 315  Q
    ||||||||||| ||||||| |||  || ||||||||||||||||||||||| |||||    
T  11555972 attactacgataggaaatgttgatgttatattataataatgatgagaatgacgatgt 11555916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 11098355 - 11098468
Alignment:
Q  189 gagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgta 288  Q
    ||||||||||| |||||||||||| | |||  |||||| ||||||| ||||||||||||||||||||||||||||||   |||||||| ||||  || ||    
T  11098355 gagtaatgatgaggagtcctataattgtaatggagagtgatgacgattaatattatatatatgtaaagaaattactattgtgggaaataatgatgttata 11098454  T
Q  289 ttataataatgatg 302  Q
    ||||||||||||||    
T  11098455 ttataataatgatg 11098468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 11098243 - 11098356
Alignment:
Q  34 ataaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtca 133  Q
    |||||||||||||| ||||| ||||| || |||||||| |||| ||   |||||||||||| |||| ||||||||| |||||||  | || || ||||||    
T  11098243 ataaagtatatagagggcctagaatatattagagaatatagtacgtat-gtgagatgaataataaagtaaaataaagggatgttgacgtataaggagtca 11098341  T
Q  134 cgcgtaaggtgtgga 148  Q
    ||| |||||||||||    
T  11098342 cgcataaggtgtgga 11098356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 15890295 - 15890368
Alignment:
Q  35 taaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaa 109  Q
    |||||||||||||  |||| ||||||||||  | ||||||||||||| || ||||||||| || |||||||||||    
T  15890295 taaagtatatagagagcctagaatagatgaagggatagagtatgtcg-gtaagatgaataatataataaaataaa 15890368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 83 - 316
Target Start/End: Original strand, 10641216 - 10641449
Alignment:
Q  83 gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat 182  Q
    |||||||||||| ||||||||| |||||||||||| || ||||||||||||| ||| ||| ||||| ||| ||   ||||||||||||||||||||||||    
T  10641216 gtgagatgaataataaaataaagtaaatggatgttggcgtagaatgagtcacacgtgaggcgtggattaatgaagagataaggtggtgatataagcggat 10641315  T
Q  183 gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag 282  Q
    |||| |||||||||| | |||||||||||||| | ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  10641316 gatagagagtaatgacgaggagtcctataactgtgacagagagcgatgacgattaatattatatatatgtaaagaaattactacgatgggaaattatgag 10641415  T
Q  283 tttgtattataataatgatgagaatgatgatgtc 316  Q
     || ||||||||||||||||||||||||||||||    
T  10641416 gttatattataataatgatgagaatgatgatgtc 10641449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 14970343 - 14970060
Alignment:
Q  34 ataaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtca 133  Q
    |||||||||||||| ||||| |||||||| |||||||||||||  ||   ||||| ||||| |||||||||||||| | |||||    ||||||||||||    
T  14970343 ataaagtatatagagggcctagaatagataagagaatagagtacctctc-tgagaagaataataaaataaaataaaggaatgttgatgtagaatgagtca 14970245  T
Q  134 cgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacg 233  Q
    | ||||| ||||||| ||| ||   ||||| ||||||||||||  |||||||| |||||||||||| ||||||||| |||| | ||| ||| | ||||||    
T  14970244 ctcgtaaagtgtggattaatgaagagataaagtggtgatataaatggatgatagagagtaatgatgaggagtcctacaactgtgacaaagaatgatgacg 14970145  T
Q  234 agtaatattatat--atatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 316  Q
      |||||||||||  |||| || |||||||||  ||||||||||||||||  || |||||||||||  |||||||||| ||||||    
T  14970144 gttaatattatatatatatttatagaaattaccgcgatgggaaatgatgatgttatattataataacaatgagaatgacgatgtc 14970060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 316
Target Start/End: Original strand, 10906699 - 10906854
Alignment:
Q  161 taaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat 260  Q
    |||||||||||||||| ||| ||| |||||||||||| | ||| ||||||||||   ||||||||| | |  |  ||||||||| ||||||| || | ||    
T  10906699 taaggtggtgatataaacggttgacaaagagtaatgacgaggaatcctataactgcgacagagagtgaagggggttaatattatgtatatgtcaacatat 10906798  T
Q  261 tactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 316  Q
     | || |||| ||||||||||  || ||||||||||||||||||||||| ||||||    
T  10906799 aaataggatgtgaaatgatgatgttatattataataatgatgagaatgacgatgtc 10906854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 9191181 - 9191065
Alignment:
Q  159 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 258  Q
    |||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||| | | | ||||| |||| || | |||| |||||||||| || ||    
T  9191181 gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataa 9191082  T
Q  259 attactacgatgggaaa 275  Q
    || | ||||||| ||||    
T  9191081 ataaatacgatgagaaa 9191065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 19547185 - 19547262
Alignment:
Q  34 ataaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatgg 112  Q
    |||||||||||| |   ||| |||||||||||||||||| |||||||  |||||||| ||| |||||||||||| ||||    
T  19547185 ataaagtatatatagatcctagaatagatgagagaatagggtatgtc-tgtgagatggataataaaataaaatagatgg 19547262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 31 - 316
Target Start/End: Original strand, 24831871 - 24832161
Alignment:
Q  31 gggataaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgttagcatagaatgag 130  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||| ||||||| || |||||||||    
T  24831871 gggataaagtatatatagggccttgaatagaagagagaatagagtatgtct-gtgagatgaataataaaataaaataaagggatgttggcgtagaatgag 24831969  T
Q  131 tcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatg 230  Q
    |||||||||||| || || ||| ||   |||| | ||||||| ||||||||||||| |||||||||||| |||||||||||| | | ||| ||||| |||    
T  24831970 tcacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggatgatagagagtaatgatgaggagtcctataattgtgacaaagagtgatg 24832069  T
Q  231 acgagtaatattat------atatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 316  Q
    | || |||||||||      |||||||||||||||||||||||||| ||||||||||| || || ||||||| |||||||||||| ||||||    
T  24832070 atgattaatattatatatacatatatgtaaagaaattactacgatgagaaatgatgaggttatactataatattgatgagaatgacgatgtc 24832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 300
Target Start/End: Complemental strand, 13935849 - 13935715
Alignment:
Q  165 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact 264  Q
    |||||||||||| ||| ||||| |||||||||||  ||| |||||||||  | ||| ||||| ||||| | | ||| ||||| ||||||||  ||| | |    
T  13935849 gtggtgatataaacggttgatagagagtaatgattaggaatcctataacggtgacaaagagtgatgacaattgatactatatctatgtaaatgaataaat 13935750  T
Q  265 acgatgggaaatgatgagtttgtattataataatga 300  Q
    ||||| |||||| ||||  || ||||||||||||||    
T  13935749 acgat-ggaaataatgatgttatattataataatga 13935715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 31 - 316
Target Start/End: Original strand, 14481471 - 14481761
Alignment:
Q  31 gggataaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgttagcatagaatgag 130  Q
    ||||||||||||||| | || |||||||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||||||| || |||||||||    
T  14481471 gggataaagtatatatagggtcttgaatagatgagagaatagagtatgtct-gtgagatgaataataaaataaaataaagggatgttggcgtagaatgag 14481569  T
Q  131 tcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatg 230  Q
    |||||||||||| ||||| ||| ||   ||||   ||||||| ||||||||||||| |||||||||||| |||||||||||||| | ||| ||||| |||    
T  14481570 tcacgcgtaaggagtggattaatgaagagatacaatggtgatgtaagcggatgatagagagtaatgatgaggagtcctataactgtgacaaagagtgatg 14481669  T
Q  231 acgagtaatat------tatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 316  Q
    | || ||||||      |||||||||||||||||||||||||||||||| |||||||| || || ||||||| ||||||| |||| ||||||    
T  14481670 atgattaatattatatatatatatatgtaaagaaattactacgatgggacatgatgaggttatactataatattgatgaggatgacgatgtc 14481761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 17791155 - 17790941
Alignment:
Q  35 taaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcac 134  Q
    |||| |||||||| ||||| |||||||||||||||||||||||| |  ||||| |||||| ||  ||||| |||| |||||| ||| ||||||||| |||    
T  17791155 taaattatatagagggcctcgaatagatgagagaatagagtatg-cttgtgaggtgaataatacgataaagtaaagggatgtcagcgtagaatgagccac 17791057  T
Q  135 gcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacga 234  Q
    | |||| ||||||| ||| ||   ||||||||| || ||||||||||||| | |||||||||||| |||||||||||||| | ||||||||| |||| ||    
T  17791056 gagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatgaggagtcctataactttgacagagagtgatgatga 17790957  T
Q  235 gtaatattatatatat 250  Q
     |||||||||||||||    
T  17790956 ttaatattatatatat 17790941  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 19099595 - 19099381
Alignment:
Q  35 taaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcac 134  Q
    |||| |||||||| ||||| |||||||||||||||||||||||| |  ||||| |||||| ||  ||||| |||| |||||| ||| ||||||||| |||    
T  19099595 taaattatatagagggcctcgaatagatgagagaatagagtatg-cttgtgaggtgaataatacgataaagtaaagggatgtcagcgtagaatgagccac 19099497  T
Q  135 gcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacga 234  Q
    | |||| ||||||| ||| ||   ||||||||| || ||||||||||||| | |||||||||||| |||||||||||||| | ||||||||| |||| ||    
T  19099496 gagtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatgaggagtcctataactttgacagagagtgatgatga 19099397  T
Q  235 gtaatattatatatat 250  Q
     |||||||||||||||    
T  19099396 ttaatattatatatat 19099381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 22159931 - 22159871
Alignment:
Q  166 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 226  Q
    ||||||||||| ||| ||||| |||||||||||| ||| |||||||||||| ||| |||||    
T  22159931 tggtgatataaacggttgatagagagtaatgatgaggaatcctataactatgacaaagagt 22159871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 5943813 - 5943874
Alignment:
Q  55 gaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgtt 117  Q
    |||||||||||| ||||||||||||| | | ||||||||| |||||||||||| | |||||||    
T  5943813 gaatagatgagaaaatagagtatgtcca-taagatgaataataaaataaaatagagggatgtt 5943874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 21975335 - 21975275
Alignment:
Q  166 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 226  Q
    ||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| |||||    
T  21975335 tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt 21975275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 21997766 - 21997706
Alignment:
Q  166 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 226  Q
    ||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| |||||    
T  21997766 tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt 21997706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 159 - 315
Target Start/End: Original strand, 22614701 - 22614857
Alignment:
Q  159 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 258  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  22614701 gataaggtggtgatataagcggatgatagagagtattgatgaggagtcctataactatgacagagagtgatgacgattaatattatatatatgtaaagaa 22614800  T
Q  259 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 315  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||| |||||    
T  22614801 attactacgatgggaaatgatgaggttatattataataatgaagagaatgacgatgt 22614857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 20026251 - 20025970
Alignment:
Q  34 ataaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtca 133  Q
    |||||||||||| | ||||| ||||||||||||||||| |||| |||  || ||||||||| ||||||| |||||| |||||||  | |  |||||||||    
T  20026251 ataaagtatatatagggcctagaatagatgagagaatatagtacgtct-gtaagatgaataataaaatagaataaagggatgttgacgtcaaatgagtca 20026153  T
Q  134 cgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacg 233  Q
    |||||||||||| || ||| ||   |||||||| ||||||||| |  |||||| ||| |||||| | ||||||||| |||||| ||| ||||| ||||||    
T  20026152 cgcgtaaggtgttgattaatgaagagataaggttgtgatataaacatatgatagagaataatgaagaggagtcctacaactatgacaaagagtgatgacg 20026053  T
Q  234 agtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 316  Q
    | | |||||||||||||||||||||||||| | ||||| |||||||||  || |||||||||||  |||| ||||||||||||    
T  20026052 attcatattatatatatgtaaagaaattaccatgatggcaaatgatgatgttatattataataacaatgacaatgatgatgtc 20025970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 316
Target Start/End: Complemental strand, 11655631 - 11655474
Alignment:
Q  159 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 258  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||||| || | ||||||||| | || || |||||||||||||||||||||||    
T  11655631 gataaggtggtgatataagcggatgataaagaatattgatgaggagtcctatagctgtgacagagagtgacgatgattaatattatatatatgtaaagaa 11655532  T
Q  259 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 316  Q
    ||||||||||||| |||||||||| || |||||||||||||| |||||||| ||||||    
T  11655531 attactacgatggaaaatgatgaggttatattataataatgaagagaatgacgatgtc 11655474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 13477489 - 13477596
Alignment:
Q  201 ggagtcctataactataacagagagtaatgacgagtaatattata------tatatgtaaagaaattactacgatgggaaatgatgagtttgtattataa 294  Q
    |||||||||||||| ||||| ||||| ||||||| ||||||||||      |||||||||||||||||||||||||||||| |||||  || ||||||||    
T  13477489 ggagtcctataactgtaacaaagagtgatgacgattaatattatatatatatatatgtaaagaaattactacgatgggaaaggatgatgttatattataa 13477588  T
Q  295 taatgatg 302  Q
    ||||||||    
T  13477589 taatgatg 13477596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 260
Target Start/End: Original strand, 4531649 - 4531820
Alignment:
Q  88 atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata 186  Q
    ||||||| |||||||||||| | || |||| || || || ||||||||| ||||||  |||| ||| ||   |||||||||||||||||| ||| |||||    
T  4531649 atgaataataaaataaaatagaggggtgttggcgtataaatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggttgata 4531748  T
Q  187 aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat 260  Q
     |||||||||||| ||| ||| |||| | | ||  ||||| ||||| | | |||||||||||||||||| ||||    
T  4531749 gagagtaatgatgaggaatcc-ataa-tgtgacgaagagtgatgacaattgatattatatatatgtaaataaat 4531820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 63 - 303
Target Start/End: Original strand, 44586336 - 44586574
Alignment:
Q  63 gagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggat 161  Q
    ||||||||||||||| || | | | ||||||| | |||||||||| | |||||||  ||||||| ||||||| ||||||||  |||| |||  |   |||    
T  44586336 gagagaatagagtatttcca-taaaatgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagat 44586434  T
Q  162 aaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaatt 261  Q
    ||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| || |||||||||||||||||||||||    
T  44586435 aaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattagtattatatatatgtaaagaaatt 44586532  T
Q  262 actacgatgggaaatgatgagtttgtattataataatgatga 303  Q
    ||||||||  ||||||||||  ||  ||||||||||| ||||    
T  44586533 actacgatatgaaatgatgatgttaaattataataataatga 44586574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 192
Target Start/End: Complemental strand, 24786425 - 24786268
Alignment:
Q  34 ataaagtatatagaaggccttgaatagatgagagaatagagtatgtcgagtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtca 133  Q
    ||||||||||||||  |||| |||||||||||||||||||| | |||  |||||||||||| |||||||||||||| |||||||  | |||||| |||||    
T  24786425 ataaagtatatagattgcctagaatagatgagagaatagagcacgtct-gtgagatgaataataaaataaaataaagggatgttgacgtagaataagtca 24786327  T
Q  134 cgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagt 192  Q
    | |||||||| | || ||| || | || ||||||  ||||||| || |||||| |||||    
T  24786326 cacgtaaggtatagattaatgaaaagagaaggtgaagatataaacgaatgatagagagt 24786268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 16862432 - 16862347
Alignment:
Q  165 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat 250  Q
    ||||| |||||| ||| ||||||||| |||||||| ||| ||||||||||| |||| || ||   || || |||||||||||||||    
T  16862432 gtggtaatataaacggttgataaagactaatgatgaggaatcctataactacaacaaagggtgtcgatgattaatattatatatat 16862347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 316
Target Start/End: Complemental strand, 1545 - 1389
Alignment:
Q  159 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 258  Q
    ||||| ||| ||| ||| |||||||||| |||||| | ||| |||||||||||||  | | ||||||| ||||| | ||||||| ||||| || ||| ||    
T  1545 gataatgtgatgacatatgcggatgatatagagtatttatgaggagtcctataaccgtgaaagagagtgatgactattaatatt-tatatgtggaaataa 1447  T
Q  259 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 316  Q
    ||||| || |||| |||||||||| || ||||||||||||||||||||||| ||||||    
T  1446 attacaacaatggaaaatgatgaggttatattataataatgatgagaatgacgatgtc 1389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 1567041 - 1567154
Alignment:
Q  165 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact 264  Q
    |||||||||||| |||  |||| || ||||| ||| ||| || ||||| | | ||| ||||| ||||||| | |||||||||||||||||| |||| | |    
T  1567041 gtggtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaat 1567140  T
Q  265 acgatgggaaatga 278  Q
    |||||| |||||||    
T  1567141 acgatgagaaatga 1567154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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