View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19645_high_24 (Length: 310)

Name: NF19645_high_24
Description: NF19645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19645_high_24
NF19645_high_24
[»] scaffold0091 (3 HSPs)
scaffold0091 (187-302)||(29057-29172)
scaffold0091 (47-93)||(24710-24756)
scaffold0091 (47-93)||(28907-28953)
[»] scaffold0218 (2 HSPs)
scaffold0218 (188-302)||(14378-14492)
scaffold0218 (47-93)||(14227-14273)
[»] chr3 (9 HSPs)
chr3 (190-302)||(16642300-16642412)
chr3 (189-302)||(4712800-4712913)
chr3 (187-302)||(14062778-14062893)
chr3 (187-302)||(14055037-14055152)
chr3 (191-292)||(13926858-13926960)
chr3 (47-93)||(4713023-4713069)
chr3 (47-93)||(16642123-16642169)
chr3 (47-93)||(14055248-14055294)
chr3 (53-93)||(14063009-14063049)
[»] chr6 (4 HSPs)
chr6 (187-302)||(14989375-14989490)
chr6 (189-302)||(14980263-14980376)
chr6 (47-93)||(14980486-14980532)
chr6 (187-224)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (187-302)||(51658662-51658777)
chr1 (187-295)||(13882243-13882351)
chr1 (47-93)||(13882490-13882536)
chr1 (202-296)||(1567069-1567166)
chr1 (47-93)||(51658879-51658925)
[»] chr7 (8 HSPs)
chr7 (187-302)||(48376787-48376902)
chr7 (187-302)||(16060512-16060627)
chr7 (187-292)||(4531759-4531865)
chr7 (47-93)||(9080196-9080242)
chr7 (47-93)||(16060364-16060410)
chr7 (47-93)||(48376627-48376673)
chr7 (47-93)||(16069031-16069077)
chr7 (187-224)||(9080338-9080375)
[»] chr8 (6 HSPs)
chr8 (187-302)||(23658526-23658649)
chr8 (187-302)||(23657751-23657884)
chr8 (47-93)||(23657638-23657684)
chr8 (47-89)||(23658413-23658455)
chr8 (47-90)||(17862270-17862313)
chr8 (257-292)||(29293929-29293964)
[»] scaffold1269 (1 HSPs)
scaffold1269 (210-302)||(1-93)
[»] scaffold0003 (2 HSPs)
scaffold0003 (187-262)||(130795-130870)
scaffold0003 (47-93)||(130623-130669)
[»] chr2 (1 HSPs)
chr2 (187-292)||(23656470-23656576)
[»] scaffold0319 (1 HSPs)
scaffold0319 (233-302)||(13570-13639)
[»] chr4 (2 HSPs)
chr4 (208-278)||(3576240-3576311)
chr4 (47-90)||(19728471-19728514)
[»] scaffold0063 (2 HSPs)
scaffold0063 (47-93)||(28482-28528)
scaffold0063 (187-225)||(28342-28380)
[»] scaffold1043 (1 HSPs)
scaffold1043 (47-92)||(1449-1494)
[»] scaffold0061 (1 HSPs)
scaffold0061 (47-90)||(18128-18171)


Alignment Details
Target: scaffold0091 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 29057 - 29172
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 286  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 29156  T
Q  287 cctcattattcatctc 302  Q
    ||||||||||||||||    
T  29157 cctcattattcatctc 29172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 24710 - 24756
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  24710 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 24756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 28907 - 28953
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  28907 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 28953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 188 - 302
Target Start/End: Original strand, 14378 - 14492
Alignment:
Q  188 tcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 287  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14477  T
Q  288 ctcattattcatctc 302  Q
    |||||||||||||||    
T  14478 ctcattattcatctc 14492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 14227 - 14273
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||    
T  14227 atgtatattagacaccatcatataagtcatcatcataattatacgtc 14273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 190 - 302
Target Start/End: Original strand, 16642300 - 16642412
Alignment:
Q  190 atcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcct 289  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcct 16642399  T
Q  290 cattattcatctc 302  Q
    |||||||||||||    
T  16642400 cattattcatctc 16642412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 4712913 - 4712800
Alignment:
Q  189 catcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcc 288  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 4712814  T
Q  289 tcattattcatctc 302  Q
    ||||||||||||||    
T  4712813 tcattattcatctc 4712800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 187 - 302
Target Start/End: Complemental strand, 14062893 - 14062778
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 286  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaat 14062794  T
Q  287 cctcattattcatctc 302  Q
    ||||||||||||||||    
T  14062793 cctcattattcatctc 14062778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 187 - 302
Target Start/End: Complemental strand, 14055152 - 14055037
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 286  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||  | |    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcgcattatagaat 14055053  T
Q  287 cctcattattcatctc 302  Q
    ||||||||||||||||    
T  14055052 cctcattattcatctc 14055037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 13926960 - 13926858
Alignment:
Q  191 tcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatgtattcct 289  Q
    |||||||||| |||||||||||||||| |||||||||||||||||| ||| || |||||||||||  | ||||||||||||| |||||||||| ||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatcaattgtcatcactcttcatcacattatggattcct 13926861  T
Q  290 cat 292  Q
    |||    
T  13926860 cat 13926858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 4713069 - 4713023
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  4713069 atgtatattagacaccatcattcaagttatcatcataattatacgtc 4713023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 16642123 - 16642169
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  16642123 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 16642169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 14055294 - 14055248
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||    
T  14055294 atgtatattagacatcatcattcaagtcatcatcataattatacgtc 14055248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 14063049 - 14063009
Alignment:
Q  53 attagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  14063049 attagacaccatcattcaagtcatcatcataattatacgtc 14063009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 187 - 302
Target Start/End: Complemental strand, 14989490 - 14989375
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 286  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 14989391  T
Q  287 cctcattattcatctc 302  Q
    | ||||||||||||||    
T  14989390 cgtcattattcatctc 14989375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 14980376 - 14980263
Alignment:
Q  189 catcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcc 288  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 14980277  T
Q  289 tcattattcatctc 302  Q
    ||||||||||||||    
T  14980276 tcattattcatctc 14980263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 14980532 - 14980486
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  14980532 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 14980486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcat 224  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 187 - 302
Target Start/End: Complemental strand, 51658777 - 51658662
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 286  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 51658678  T
Q  287 cctcattattcatctc 302  Q
    ||||||||||||||||    
T  51658677 cctcattattcatctc 51658662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 187 - 295
Target Start/End: Complemental strand, 13882351 - 13882243
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 286  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacaatatggatt 13882252  T
Q  287 cctcattat 295  Q
    |||||||||    
T  13882251 cctcattat 13882243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 13882536 - 13882490
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  13882536 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 13882490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 1567166 - 1567069
Alignment:
Q  202 atataaacattatcatctctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcac-attatgt-attcctcattatt 296  Q
    ||||||| ||| |||| |||||||||||||||||  |||||| |||||||||||  |||||||||||||| ||||| ||||| | |||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattatt 1567069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 51658925 - 51658879
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    |||||||||||| | |||| ||||||| |||||||||||||||||||    
T  51658925 atgtatattagatatcatcgttcaagtcatcatcataattatacgtc 51658879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 48376787 - 48376902
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 286  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatagatt 48376886  T
Q  287 cctcattattcatctc 302  Q
    ||||||||||||||||    
T  48376887 cctcattattcatctc 48376902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 16060512 - 16060627
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 286  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| || |||||||||  |||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatcactcctcatcacattatagatt 16060611  T
Q  287 cctcattattcatctc 302  Q
    ||||||||||||||||    
T  16060612 cctcattattcatctc 16060627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 292
Target Start/End: Complemental strand, 4531865 - 4531759
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatgtat 285  Q
    |||||||||| ||| |||||| |||||| || |||||| ||||||||||| |||||| |||||||||||  | |||||||||||||||||||||||| ||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatcaattgtcatcactcttcgtcacattatggat 4531766  T
Q  286 tcctcat 292  Q
    |||||||    
T  4531765 tcctcat 4531759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 9080196 - 9080242
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  9080196 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 9080242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 16060364 - 16060410
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  16060364 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 16060410  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 48376627 - 48376673
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||    
T  48376627 atgtatattagacaccatcatttaagtcatcatcataattatacgtc 48376673  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 16069077 - 16069031
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    |||||||||||||| |||||||||| | |||||||||||||||||||    
T  16069077 atgtatattagacatcatcattcaaatcatcatcataattatacgtc 16069031  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcat 224  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

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Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 23658526 - 23658649
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattaca--------tgtatataatatcttcgtcatcactcttcgtcacat 278  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||        | ||||||||||||||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatcactcttcgtcacat 23658625  T
Q  279 tatgtattcctcattattcatctc 302  Q
    |||| |||||||||||||||||||    
T  23658626 tatggattcctcattattcatctc 23658649  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 23657751 - 23657884
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtata------------------taatatcttcgtcatcactc 268  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||                  ||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatatatatatatatatatatataatatcttcgtcatcactc 23657850  T
Q  269 ttcgtcacattatgtattcctcattattcatctc 302  Q
    |||||||||||||| |||||||||||||||||||    
T  23657851 ttcgtcacattatggattcctcattattcatctc 23657884  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 23657638 - 23657684
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  23657638 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 23657684  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 23658413 - 23658455
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattata 89  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  23658413 atgtatattagacaccatcattcaagtcatcatcataattata 23658455  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 17862313 - 17862270
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatac 90  Q
    |||||||||||||| |||||||||| | ||||||||||||||||    
T  17862313 atgtatattagacatcatcattcaaatcatcatcataattatac 17862270  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 29293929 - 29293964
Alignment:
Q  257 tcgtcatcactcttcgtcacattatgtattcctcat 292  Q
    |||||||||||||||||||||||||| |||||||||    
T  29293929 tcgtcatcactcttcgtcacattatggattcctcat 29293964  T

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Target: scaffold1269 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 210 - 302
Target Start/End: Original strand, 1 - 93
Alignment:
Q  210 attatcatctctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcctcattattcatctc 302  Q
    |||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaatcctcattattcatctc 93  T

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Target: scaffold0003 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatcttcgtca 262  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

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Target: scaffold0003; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 130623 - 130669
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  130623 atgtatattagacaccatcattcaagtcatcatcataattatacgtc 130669  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 292
Target Start/End: Complemental strand, 23656576 - 23656470
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatgtat 285  Q
    ||||| |||| ||| ||||||| |||||||| |||||| ||||||||||| || ||| |||||||||||  |||||||||||||||||||||||||| ||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatcaatcgtcatcactcttcgtcacattatggat 23656477  T
Q  286 tcctcat 292  Q
    |||||||    
T  23656476 tcctcat 23656470  T

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Target: scaffold0319 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 13639 - 13570
Alignment:
Q  233 tttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcctcattattcatctc 302  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  13639 tttaattacatatatataatatcttcgtcatcactctttgtcacatcatggattcctcattattcatctc 13570  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 3576311 - 3576240
Alignment:
Q  208 acattatcatctctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacat 278  Q
    |||| ||||||||||||||||||||||||  ||||| ||||||| |||  ||||||||||||||||||||||    
T  3576311 acatcatcatctctcatcgtatttatttatatacatttatataaaatcaatcgtcatcactcttcgtcacat 3576240  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 19728514 - 19728471
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatac 90  Q
    |||||||||||||| |||||||||| | ||||||||||||||||    
T  19728514 atgtatattagacatcatcattcaaatcatcatcataattatac 19728471  T

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Target: scaffold0063 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 28528 - 28482
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgtc 93  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||    
T  28528 atgtatattagacaccatcattcaattcatcatcataattatacgtc 28482  T

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Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  187 ctcatcatcactaacatataaacattatcatctctcatc 225  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

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Target: scaffold1043 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 1494 - 1449
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatacgt 92  Q
    |||||||||||||| |||||||||| | ||||||||||||||||||    
T  1494 atgtatattagacatcatcattcaaatcatcatcataattatacgt 1449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 18171 - 18128
Alignment:
Q  47 atgtatattagacaccatcattcaagtgatcatcataattatac 90  Q
    |||||||||||| |||||||||||||| ||||||||||| ||||    
T  18171 atgtatattagataccatcattcaagtcatcatcataatcatac 18128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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