View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19645_high_27 (Length: 302)
Name: NF19645_high_27
Description: NF19645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19645_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 10309030 - 10309327
Alignment:
| Q |
1 |
gtagaagacaggaagaccaaatatgggccaagcaaagacttcaccacaggcagtggaatagcggcagcttcatcaactaccaacagttcaacttgcgaga |
100 |
Q |
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| T |
10309030 |
gtagaagacaggaagaccaaatatgggccaagcaaagacttcaccacaggcagtggaatagcggcagcttcatcaactaccaacagttcaacttgtgaga |
10309129 |
T |
|
| Q |
101 |
gcttttcatgttcgtgtggcagtatatactgaaggnnnnnnnnnt-taagatgaataacaagtccagaattttattacttgtcaattgtaatatcagagc |
199 |
Q |
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| T |
10309130 |
gcttttcatgttcgtgtggcagtatatactgaaaaaaaaaaaaaaataagatgaataaaaagtccagaattttattacttgtcaattgtaatatcagagc |
10309229 |
T |
|
| Q |
200 |
aaaagaagtttccttaacattaagacattttttatgtcgtatatattaatgcaaaaccataactgatgaagttacctgaattgtctgtctgtggtgct |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10309230 |
aaaagaagtttccttaacattaagacattttttatgtcgtatatattaatgcaaaaccataactgatgaagttacctgaattgtctgtctgtggtgct |
10309327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 38432043 - 38432172
Alignment:
| Q |
4 |
gaagacaggaagaccaaatatgggccaagcaaagacttcaccacaggcagtggaatagcggcagcttcatcaactaccaacagttcaacttgcgagagct |
103 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||| | |||||||||||| |||| |
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| T |
38432043 |
gaagacaggaagaccagatatgggccaagcaaagacttcactgtcggcagtggaatagcagctgcttcatcaacaaccaataattcaacttgcgaaagct |
38432142 |
T |
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| Q |
104 |
tttcatgttcgtgtggcagtatatactgaa |
133 |
Q |
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| T |
38432143 |
tttcatgttcgtgtggcagtatatactgaa |
38432172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 11191838 - 11191789
Alignment:
| Q |
57 |
aatagcggcagcttcatcaactaccaacagttcaacttgcgagagctttt |
106 |
Q |
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|||||| |||||||||||||| ||||| | |||||||||||||||||||| |
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| T |
11191838 |
aatagcagcagcttcatcaacgaccaataattcaacttgcgagagctttt |
11191789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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