View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19645_high_28 (Length: 302)
Name: NF19645_high_28
Description: NF19645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19645_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 33401041 - 33400798
Alignment:
| Q |
10 |
ccacagacacccgtcaccaccaccaatcaaacctccatatatcctctagttctcctttctttgattttttattgaacaccaaaaggggagaaagagaaac |
109 |
Q |
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| T |
33401041 |
ccacacacacccgtcaccaccaccaatcaaacctccatatatcctctagttctcctttctttgattttttattgaacaccaaaaggggagaaagagaaac |
33400942 |
T |
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| Q |
110 |
gaaattgaaggttggtttgaaaattgctctttgctaattacttattcatctttcctaatttcattactattctgttgatatcagcaaaattatgaaattt |
209 |
Q |
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| T |
33400941 |
gcaattgaagtttggtttcaaaattgctctttactaattacttattcttctttcctaatttcattactattatgttgatatgagcaaaattatgaaattt |
33400842 |
T |
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| Q |
210 |
cacaaaaacaaaacatgatagagccacttcaatttattgttact |
253 |
Q |
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| T |
33400841 |
cacaaaaacaaaacatgataaagccacttcaatttattgttact |
33400798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 34 - 266
Target Start/End: Complemental strand, 33046261 - 33046029
Alignment:
| Q |
34 |
aatcaaacctccatatatcctctagttctcctttctttgattttttattgaacaccaaaaggggagaaagagaaacgaaattgaaggttggtttgaaaat |
133 |
Q |
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| T |
33046261 |
aatcaaacctccatatatcctctagttcttctttctttgattttttattgaacaccaaaaggggagaaagagaaacaaaattgaaggttggtttgaaaat |
33046162 |
T |
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| Q |
134 |
tgctctttgctaattacttattcatctttcctaatttcattactattctgttgatatcagcaaaattatgaaatttcacaaaaacaaaacatgatagagc |
233 |
Q |
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| T |
33046161 |
tgcactgtgctaattacttattcttctttcctaatttcattactattccgttgatatgagcaaaattatgaaatttcacaaaaacaaaacatgatagagc |
33046062 |
T |
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| Q |
234 |
cacttcaatttattgttacttttcttattctta |
266 |
Q |
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| T |
33046061 |
cacttcaatttattgttacttttcttattctta |
33046029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 49006323 - 49006570
Alignment:
| Q |
10 |
ccacagacacccgtcaccaccaccaatcaaacctccatatatcctctagttctcctttctttga--ttttttattgaacaccaaaaggggagaaagag-a |
106 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || ||| ||||||||| | |
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| T |
49006323 |
ccacacacaccagtcaccaccaccaatcaaacctccatatatcctgtagttctcctttctttgattttttttattgaacaacagaagctgagaaagagaa |
49006422 |
T |
|
| Q |
107 |
aacgaaattgaaggttggtttgaaaattgctc-------------------tttgctaattacttattcatctttcctaatttcattactattctgttga |
187 |
Q |
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| T |
49006423 |
aatgaaattgaaggttggtttgaaaattgctccttctttcttcttatctaatttgctaatcacttattcttctttcctaatttcattactattctgttga |
49006522 |
T |
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| Q |
188 |
tatcagcaaaattatgaaatttcacaaaaacaaaacatgatagagcca |
235 |
Q |
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| T |
49006523 |
tatgagcaaaattgtgaaatttcacccaaacaaaacatgatagagcca |
49006570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 7909782 - 7909861
Alignment:
| Q |
160 |
tttcctaatttcattactattctgttgatatcagcaaaattatgaaatttcacaaaaacaaaacatgatagagccacttc |
239 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
7909782 |
tttcttaatttcattactattctgttgatatgagcaaaattgtgaaatttcacctaaacaaaacatgatagagccacttc |
7909861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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