View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19645_high_3 (Length: 369)
Name: NF19645_high_3
Description: NF19645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19645_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 184 - 341
Target Start/End: Original strand, 6942439 - 6942596
Alignment:
| Q |
184 |
aagaaaaacatttaagaggaatgtaacattttacattggtttccctaccaatgttaacatggcatgttacccataagtatgttagaacagcaaactggta |
283 |
Q |
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| T |
6942439 |
aagaaaaacatttaagaggaatgtaacagtttacattggtttccctaccaatgttaacatggcatgttacccataagtatgttagaacagcaaactggtt |
6942538 |
T |
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| Q |
284 |
cnnnnnnnnnnnnnttaaagaaacagtaaacgcaaataatgaacacatgatatttggt |
341 |
Q |
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| T |
6942539 |
caaaaatcaaaaaattaaagaaacagtaaacgcaaataatgaacacacgatgtttggt |
6942596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 6788323 - 6788244
Alignment:
| Q |
124 |
acaagatttgtaa-actgaatagagatgattacaa----caacataattagagaacaatagagcgaagaaaaacatttaa |
198 |
Q |
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| T |
6788323 |
acaagatttgtattactggatagagatgattacaatttacaacacaattagagaacaatagatcgaagaaaaagatttaa |
6788244 |
T |
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