View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19645_low_1 (Length: 345)
Name: NF19645_low_1
Description: NF19645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19645_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 49009800 - 49009498
Alignment:
| Q |
11 |
agaatatgcacgaccatatccttcctaattctactcaaaatgactctatttattggaagcattttgaatcaaatttgttcatctttaaaaatgtttttgg |
110 |
Q |
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| T |
49009800 |
agaaaatgcacgaccatatccttcctaattctactcaaaatgactctatttattggaagcattttgaatcaaatttgttcatctttaaaaatgtttttgg |
49009701 |
T |
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| Q |
111 |
ttatttgaatcaaccttatttgttggcctcctttgtttttacacgctttcaagagttctcttattgttccttagagccccagaagcaggaggcaaaattg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49009700 |
ttatttgaatcaaccttatttgttggcctcctttgtttttacacgctttcaagagttctcttattgttccttagagccctagaagcaggaggcaaaattg |
49009601 |
T |
|
| Q |
211 |
catatgtttaacaagggacatctatttctgtatatgtagagaagaaaattgttgtgcatgtcatttagcaaatcatgttttctctctttctggcttttct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49009600 |
aatatgtttaacaagggacatctatttctgtatatgtagagaagaaaattgttgtgcatgtcatttagcaaatcatgatttctctctttctggcttttct |
49009501 |
T |
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| Q |
311 |
ttc |
313 |
Q |
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||| |
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| T |
49009500 |
ttc |
49009498 |
T |
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