View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19646_high_13 (Length: 346)
Name: NF19646_high_13
Description: NF19646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19646_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 3399240 - 3399578
Alignment:
| Q |
1 |
aagttttaaaagtctcagcttttgcatctcctgcaaagaatcagtaccaaatataattctgcctgttctttggtacttcaaaatcattcccacaatagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3399240 |
aagttttaaaagtctcagcttttgcatctcctgcaaagaatcagtaccaaatataattctgcctgttctttggtacttcaaaatcattcccacaatagta |
3399339 |
T |
|
| Q |
101 |
tatgttccctgcatgtgaagtnnnnnnngctgagaaaagttagagaaaatgttcttcattttccttgcttgctagaaagctaggtagcatcgacacttca |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3399340 |
tatgttccctgcatgtgaagtaaaaaaagctgagaaaagttagagaaaatgttcttcattttccttgcttgctagaaagctaggtagcatcgacacttca |
3399439 |
T |
|
| Q |
201 |
tattgagggtgtgttttgcatccgacacaagctggtgctagacaatatacatacacatgtgattttattcaatcatttgnnnnnnnctcaat---ttatt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
3399440 |
tattgagggtgtgttttgcatccgacacaagctggtgctagacaatatacatacacatgtgattttattcaatcatttgtttttttctcaatttattatt |
3399539 |
T |
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| Q |
298 |
actattgtcgacgtcttactgtaaaatatcgtgtctgtg |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
3399540 |
actattgtcgacgtcttactgtaaaatatcgtgtttgtg |
3399578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 31175314 - 31175045
Alignment:
| Q |
1 |
aagttttaaaagtctcagcttttgcatctcctgcaaagaatcagtaccaaatataattctgcctgttctttggtacttcaaaatcattcccacaatagta |
100 |
Q |
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|
|||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
31175314 |
aagttttaaaagcctcagcttttgcatctcctggaaagaattagtaccaaatataatcctgcctgttctttggcacttcaaaatcattccctcaatagta |
31175215 |
T |
|
| Q |
101 |
tatgttccctgcatgtgaagtnnnnnnngctgagaaaagttagagaaaatgttcttcattttccttgcttgctagaaagctaggtagcatcgacacttca |
200 |
Q |
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| ||||||||||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31175214 |
tctgttccctgcatgtgaagtaaaaaaagctgagaaaagtaagggaaaatgtttttcattttccttgcttgctagaaagctaggtagcatcgacacttca |
31175115 |
T |
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| Q |
201 |
tattgagggtgtgttttgcatccgacacaagctggtgctagacaatatacatacacatgtgattttattcaatc |
274 |
Q |
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|||||||| || |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
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| T |
31175114 |
tattgaggacgtattttgcatccgacacaagttggtgccagacaat----atacacatgtgattttattcaatc |
31175045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 8372388 - 8372508
Alignment:
| Q |
1 |
aagttttaaaagtctcagcttttgcatctcctgcaaagaatcagtaccaaatataattctgcctgttctttggtacttcaaaatcattcccacaatagta |
100 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||| |||| || ||| ||||| |||||||||||||||||| |||||||||||| ||| ||| ||| |
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| T |
8372388 |
aagttttaaaagcctcagtttttccatctcctggaaagcattagtgccaaagcaaattctgcctgttctttgccacttcaaaatcaaaccctcaacagtt |
8372487 |
T |
|
| Q |
101 |
tatgttccctgcatgtgaagt |
121 |
Q |
| |
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| |||||||| |||| ||||| |
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| T |
8372488 |
tttgttccctacatgagaagt |
8372508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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