View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19646_high_3 (Length: 427)
Name: NF19646_high_3
Description: NF19646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19646_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 31 - 402
Target Start/End: Complemental strand, 43365671 - 43365300
Alignment:
| Q |
31 |
acattttcattgtaccccttaatttgtaagtaatatttgattattattttcttgcagcaatttttctcaattatttgatgccgattggtttataacatcc |
130 |
Q |
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| T |
43365671 |
acattttcattgtaccccttaatttgtaagtaatatttgattattattttcttgcagcaatttttctcaattatttgatgccgattggtttataacatcc |
43365572 |
T |
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| Q |
131 |
ctccggaatgacataagagttgtaaagcaactaccaaatatgggagagaaatttgcgactccatatacagtgcgtgttccaaggaaatgcacccccaaat |
230 |
Q |
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| T |
43365571 |
ctccggaatgacataagagttgtaaagcaactaccaaatatgggagagaaatttgcgactccatatacagtgcgtgttccaaggaaatgcacccccaaat |
43365472 |
T |
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| Q |
231 |
gctacgagggtcgtgttttaccagtgctgatcaagaaacgtgtaagtgtttcattaaaggtccctaattggaagctttcatcaaaattgtgtgcctcaat |
330 |
Q |
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| T |
43365471 |
gctacgagggtcgtgttttaccagtgctgatcaagaaacgtgtaagtgtttaattaaaggtccctaattggaagctttcatcaaaattgtgtgcctcaat |
43365372 |
T |
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| Q |
331 |
tttattaataaaatttgtggttccaacattgtaagttaggtgtccaacatgctagttattgttgtgatgatg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43365371 |
tttattaataaaatttgtggttccaacattgtaagttaggtgtccaacatgctagttattgttgtgttgatg |
43365300 |
T |
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