View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19647_low_4 (Length: 297)
Name: NF19647_low_4
Description: NF19647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19647_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 1282717 - 1282428
Alignment:
| Q |
1 |
aaatagtttagaaaatttcattatgtctagaaaatgcaggcaattgatcacatcaagagtttcttaatgaaaatagaaaatatttttacaaaataaacaa |
100 |
Q |
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| T |
1282717 |
aaatagtttagaaaatttcattatgtctagaaaatgcaggcaattgatcacatcaagagtttcttaatgaaaatagaaaatatttttacaaaataaacaa |
1282618 |
T |
|
| Q |
101 |
actcataaatttcaaatgtattacttgttgataagagatgtgtttacttagtgtagacggatgagcactttggataatataaattacattaaaggaatgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1282617 |
actcataaatttcaaatgtattacttgttgataagagatgtgtttacttagtgtagacggatgagcactttggattatataaattacattaaaggaatgg |
1282518 |
T |
|
| Q |
201 |
atgttgatagcaaaagaggggtgtgggtagccctacactggagcttcactctaaagcccacattattattttttgtctttctattttctt |
290 |
Q |
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| T |
1282517 |
atgttgatagcaaaagaggggtgtgggtagcactacaccggagcttcactctaaagcccacattattattttttgtctttctattttctt |
1282428 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 27803099 - 27803135
Alignment:
| Q |
66 |
aatgaaaatagaaaatatttttacaaaataaacaaac |
102 |
Q |
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| T |
27803099 |
aatgaaaatagaaaatatttttacaaagtaaacaaac |
27803135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 13801448 - 13801399
Alignment:
| Q |
66 |
aatgaaaatagaaaatatttttacaaaataaacaaactcataaatttcaa |
115 |
Q |
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| T |
13801448 |
aatgaaaatagaaaataattttacaaagtattcaaactcttaaatttcaa |
13801399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 97
Target Start/End: Original strand, 25173492 - 25173520
Alignment:
| Q |
69 |
gaaaatagaaaatatttttacaaaataaa |
97 |
Q |
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| T |
25173492 |
gaaaatagaaaatatttttacaaaataaa |
25173520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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