View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19648_high_10 (Length: 404)
Name: NF19648_high_10
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 387
Target Start/End: Complemental strand, 31352255 - 31351879
Alignment:
| Q |
13 |
gcaaaggtgaagagggttcgattatagtcattgagaatgcaatatgaattattgtaaatgcttcaatgcaacaattcaagaaaaatgatgtagaataatt |
112 |
Q |
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| T |
31352255 |
gcaaaggtgaagagggttcgattatagtcattgagaatgcaatatgaattattctaaatgcttcaatgcaacaattcaagaaaaaagatgtagaataatt |
31352156 |
T |
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| Q |
113 |
ggttcactcttgtcttccaatttatttctcttagcatctggtatgttctcatagcataaagaatcaaatactctaaaat--gagtgacatcatgctttcc |
210 |
Q |
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| T |
31352155 |
ggttcactcttgtcttccaatttatttctcttagcatctggtatgttctcatagcataaagaatcaaatactctaaaatatgagtgacatcatgctttcc |
31352056 |
T |
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| Q |
211 |
ttctaaccaccctttctcatgaaccattgtcttcaacttcttattaggacattttttcaagatttaagttgcagtgatcactgcttctccctataattca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31352055 |
ttctaaccaccctttctcatgaaccattgtcttcaacttcttattaggacattttttcaagatttaagttgcagtgatcactgcttctccctataattca |
31351956 |
T |
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| Q |
311 |
cgtggcaacttcttctgctttaacatacttgtttccatgtctagctcacttctatttctcctctaaacaagaccatg |
387 |
Q |
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| T |
31351955 |
cgtggcaacttcttctgctttaacatacttgtttccatgtctagctcacttctatttctcctctaaacaagaccatg |
31351879 |
T |
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