View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19648_high_14 (Length: 340)
Name: NF19648_high_14
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 10379181 - 10378872
Alignment:
| Q |
18 |
caaacacaccataagagaaaatatcatttttcctcccagcagatatcaaaaaggggctgaaaatgttaccaaaaacaatagcttgtctcaccaatgatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10379181 |
caaacacaccataagagaaaatatcatttttcctcccagcagatatcaaaaaggggctgaaaatgttaccaaaaacaatagcttgtctcaccaatgatgt |
10379082 |
T |
|
| Q |
118 |
tgtagtgtttctcacacttgttggaaacacctcaataatgtaaatgagaaacacattataagctgtgcaagcactgaaaaacgatgccattgctaacccg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10379081 |
tgtagtgtttctcacacttgttggaaacacctcaataatgtaaatgagaaacacattataagctgtgcaagcactgaaaaacgatgtcattgctaacccg |
10378982 |
T |
|
| Q |
218 |
accttaattccttgttgtcccgatccaacaataacacacattatacaacatatgccactagctaccgagaatacaagaattgatggctttcttcggcgat |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10378981 |
accttaattccttgttgtcccgatccaacaataacacacattatacaacatatgccactagctaccgagaatacaagaattgatggctttctttggcgat |
10378882 |
T |
|
| Q |
318 |
tctccaagaa |
327 |
Q |
| |
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|||||||||| |
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|
| T |
10378881 |
tctccaagaa |
10378872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 10405167 - 10404858
Alignment:
| Q |
18 |
caaacacaccataagagaaaatatcatttttcctcccagcagatatcaaaaaggggctgaaaatgttaccaaaaacaatagcttgtctcaccaatgatgt |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||||||| || |||||||||||||||||||||||||| || |
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| T |
10405167 |
caaacacaccataagagaaaacatcatttttcctcccagcagatatcaaaaaaggactaaaaatgttgccgaaaacaatagcttgtctcaccaatgacgt |
10405068 |
T |
|
| Q |
118 |
tgtagtgtttctcacacttgttggaaacacctcaataatgtaaatgagaaacacattataagctgtgcaagcactgaaaaacgatgccattgctaacccg |
217 |
Q |
| |
|
||| ||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| |
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| T |
10405067 |
tgtcgtgttcctcacacttgtcggaaacaactctataatgtaaatgagaaacacattataagctgtagtagcactgaaaaacgatgtcaacgccaaccca |
10404968 |
T |
|
| Q |
218 |
accttaattccttgttgtcccgatccaacaataacacacattatacaacatatgccactagctaccgagaatacaagaattgatggctttcttcggcgat |
317 |
Q |
| |
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|| || ||||||||| ||| |||||||||| ||||||||| | |||||||| |||||| |||| || ||| |||||||||| ||||||||| | |||| |
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| T |
10404967 |
actttgattccttgtactcctgatccaacaacaacacacataacacaacatacgccactcgctattgaaaatgcaagaattgacggctttctttgccgat |
10404868 |
T |
|
| Q |
318 |
tctccaagaa |
327 |
Q |
| |
|
|||||||||| |
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|
| T |
10404867 |
tctccaagaa |
10404858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 37577342 - 37577498
Alignment:
| Q |
18 |
caaacacaccataagagaaaatatcatttttcctcccagcagatatcaaaaaggggctgaaaatgttaccaaaaacaatagcttgtctcaccaatgatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| | |||||||||| | ||| ||| || || ||||| ||||||||||||||||| || |
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|
| T |
37577342 |
caaacacaccataagagaaaatattatttttcctccca-----tgtcaaaaagggacagaatatgcaacggaacacaattgcttgtctcaccaatgaagt |
37577436 |
T |
|
| Q |
118 |
tgtagtgtttctcacacttgttggaaacacctcaataatgtaaatgagaaacacattataagc |
180 |
Q |
| |
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||| ||||| |||||| ||| ||||||| ||| |||||||| || | ||||||||||||||| |
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|
| T |
37577437 |
tgttgtgttcctcacagatgtcggaaacaactctataatgtatat-ataaacacattataagc |
37577498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 34262623 - 34262819
Alignment:
| Q |
18 |
caaacacaccataagagaaaatatcatttttcctcccagcagatatcaaaaaggggctgaaaatgttaccaaaaacaatagcttgtctcaccaatgatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||| ||| || ||||| |||||||||||||| || || |
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|
| T |
34262623 |
caaacacaccataagagaaaatattatttttcctcccagcagatatcaaaaagggacagaatatgcaaccgaacacaatcgcttgtctcaccaacgaagt |
34262722 |
T |
|
| Q |
118 |
tgtagtgtttctcacacttgttggaaacacctcaataatgtaaatgagaaacacattataagctgtgcaagcactgaaaaacgatgccattgctaac |
214 |
Q |
| |
|
||| ||||| ||||||| ||| ||||||| ||| |||||||| || ||||||||||||||||| || ||||| | |||||||| ||||||||||| |
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|
| T |
34262723 |
tgttgtgttcctcacacatgtcggaaacaactctataatgtatattagaaacacattataagccgtacaagcgccgaaaaacgcaaccattgctaac |
34262819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 35621544 - 35621706
Alignment:
| Q |
18 |
caaacacaccataagagaaaatatcatttttcctcccagcagatatcaaaaaggggctgaaaatgttaccaaaaacaatagcttgtctcaccaatgatgt |
117 |
Q |
| |
|
|||||| ||||||||| || |||| |||||||||||| ||||||||||||||||| | || ||| ||||||||| | |||||||||||||| || || |
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|
| T |
35621544 |
caaacataccataagaaaatatattatttttcctccctgcagatatcaaaaagggacaaaatatgcaaccaaaaactgttgcttgtctcaccaacgacgt |
35621643 |
T |
|
| Q |
118 |
tgtagtgtttctcacacttgttggaaacacctcaataatgtaaatgagaaacacattataagc |
180 |
Q |
| |
|
||| ||||||||||||| ||||||||||| ||| |||||||| ||||||||||| |||||||| |
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|
| T |
35621644 |
tgttgtgtttctcacacatgttggaaacaactctataatgtatatgagaaacacgttataagc |
35621706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 14579415 - 14579610
Alignment:
| Q |
18 |
caaacacaccataagagaaaatatcatttttcctcccagcagatatcaaaaaggggctgaaaatgttaccaaaaacaatagcttgtctcaccaatgatgt |
117 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||| || |||||||||||||| | || ||| ||| || |||||||||||||||||||| || || |
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|
| T |
14579415 |
caaacacaccatatgagtaaatattgtttttcctccccgccgatatcaaaaagggacaaaatatgcaaccgaacacaatagcttgtctcaccaacgacgt |
14579514 |
T |
|
| Q |
118 |
tgtagtgtttctcacacttgttggaaacacctcaataatgtaaatgagaaacacattataagctgtgcaagcactgaaaaacgatgccattgctaa |
213 |
Q |
| |
|
||| ||||| ||||||| ||| ||||||| ||| |||||||| |||||||||||||||||||| || ||||||| |||||||| |||||||||| |
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|
| T |
14579515 |
tgttgtgttcctcacacatgtcggaaacaactctataatgtatatgagaaacacattataagccgtacaagcaccgaaaaacgcaaccattgctaa |
14579610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 14544172 - 14543977
Alignment:
| Q |
18 |
caaacacaccataagagaaaatatcatttttcctcccagcagatatcaaaaaggggctgaaaatgttaccaaaaacaatagcttgtctcaccaatgatgt |
117 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||| || |||||||||||||| | || ||| ||| || |||||||||||||||||||| || || |
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|
| T |
14544172 |
caaacacaccatatgagtaaatattgtttttcctccccgcggatatcaaaaagggacaaaatatgcaaccgaacacaatagcttgtctcaccaacgacgt |
14544073 |
T |
|
| Q |
118 |
tgtagtgtttctcacacttgttggaaacacctcaataatgtaaatgagaaacacattataagctgtgcaagcactgaaaaacgatgccattgctaa |
213 |
Q |
| |
|
||| ||||| ||||||| ||| ||||||| ||| |||||||| |||||||||||||||||||| || ||||| | |||||||| |||||||||| |
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|
| T |
14544072 |
tgttgtgttcctcacacatgtcggaaacaactctataatgtatatgagaaacacattataagccgtacaagctccgaaaaacgcaaccattgctaa |
14543977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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