View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19648_high_20 (Length: 290)
Name: NF19648_high_20
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_high_20 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 2559272 - 2558997
Alignment:
| Q |
1 |
actgttaaatgattttagtattactaaaataacctttatctataactttcggtcatctctttttctctttccttcattattacaagacttcttatgtccc |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559272 |
actgttaaataattttagtattactaaaataacctttatctataactttcggtcatctctttttctctttccttcattattacaagacttcttatgtccc |
2559173 |
T |
|
| Q |
101 |
agattttcttcctttccctttctatattcctcctcctcctttcccaaccagcatttgcattccgctatgctgctcatcgtccccaatactaccaagctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
2559172 |
tgattttcttcctttccctttctatattcctcctcctcctttcccaaccagcatttgcatttcgctatgttgctcatcgtccccaatactaccaagctca |
2559073 |
T |
|
| Q |
201 |
ttcttcctcgctttcttcgtcaccatgattttcctcctcgtaaagttgaagacaattccaatctaccgtctttctc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2559072 |
ttcttcctcgctttcttcgtcaccatgattttcctcctcgtaaagttgaagacaattccaatctaccgtctttctc |
2558997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 19331092 - 19330802
Alignment:
| Q |
1 |
actgttaaatgattttagtattactaaaataacctttatctataactttcggtcatctctttttctctttccttcattattacaagacttctt-atgtcc |
99 |
Q |
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|||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
19331092 |
actgctaaataattttagttttactaaaataacctttatctataactttcgatcatctctttttctctttccttcattattacaagactagtttatgtcc |
19330993 |
T |
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| Q |
100 |
cagattttcttcctttccctttctatattcctcctcctcctttcccaaccagcatttgcattccgctatgctgctcatcgtccccaatactaccaagctc |
199 |
Q |
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| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
19330992 |
ctgatgttcttcctttccctttctatattcctcctcctcctttcccaaccagcatttgcatttcgctatgttgctcatcgtccccaatactaccaagctc |
19330893 |
T |
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| Q |
200 |
attcttcctcgctttcttcgtcaccatgattttcctcctcgtaaagttgaagacaattccaatctaccgtctttctcatcctagatctaca |
290 |
Q |
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| T |
19330892 |
attcttcctcgctttcttcgtcaccatgattttcctcctcgtaaagttgaagacaattccaatctaccgtctttctcatcctagatctaca |
19330802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 54269666 - 54269954
Alignment:
| Q |
3 |
tgttaaatgattttagtattactaaaataacctttatctataactttcggtcatctctttttctctttccttcattattacaagacttctt-atgtccca |
101 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| || ||||||| |
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| T |
54269666 |
tgttaaataattttagtattactaaaataacctttatatataactttcgatcatctctttttctctttcctttattattacaagactagtttatgtccct |
54269765 |
T |
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| Q |
102 |
gattttcttcctttccctttctatattcctcctcctcctttcccaaccagcatttgcattccgctatgctgctcatcgtccccaatactaccaagctcat |
201 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
54269766 |
gatgttcttcctttccctttctatattcctcctcctcctttcccaaccagcatttgcattccgctatgctgctcaccgtccccaatactatcaagctcat |
54269865 |
T |
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| Q |
202 |
tcttcctcgctttcttcgtcaccatgattttcctcctcgtaaagttgaagacaattccaatctaccgtctttctcatcctagatctaca |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |||| |
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| T |
54269866 |
tcttcctcgctttcttcgtcaccatgattttcctcctcgtaaagttgaagacaatcccattctactgtctttctcatcctagatttaca |
54269954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 10055991 - 10055921
Alignment:
| Q |
4 |
gttaaatgattttagtattactaaaataacctttatctataactttcggtcatctctttttctctttcctt |
74 |
Q |
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||||||| | |||||||||||||||||| |||||||| | |||| || ||||| |||||||||||||||| |
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| T |
10055991 |
gttaaataaatttagtattactaaaatagcctttatcaacaactctctgtcattgctttttctctttcctt |
10055921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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