View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19648_high_21 (Length: 290)
Name: NF19648_high_21
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_high_21 |
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| [»] scaffold0224 (2 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 364 - 549
Alignment:
| Q |
51 |
tattgattgtaatgagtagtgaaggacatacatatattgttcaacaaagcagtcacggcattgtcattttcaaagttacagggttgtgcttcctcactgc |
150 |
Q |
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| T |
364 |
tattgattgtaatgagtagtgaaggacatacatatattgttcaacaaagcagtcacggcattgtcattttcaaagttacagggttgtgcttcctcactgc |
463 |
T |
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| Q |
151 |
tgaacaaaggtacatatatctctttatcgtcctttttcatcatttcctatagtaatttacattgaagatattttctagggttttct |
236 |
Q |
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| T |
464 |
tgaacaaaggtacatatatctctttatcgtcctttttcatcatttcctatagtaatttacattgaagatattttctagggttttct |
549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 298 - 327
Alignment:
| Q |
8 |
catcatcagatttaatattatcagtattaa |
37 |
Q |
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| T |
298 |
catcatcagatttaatattatcagtattaa |
327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 42904522 - 42904337
Alignment:
| Q |
51 |
tattgattgtaatgagtagtgaaggacatacatatattgttcaacaaagcagtcacggcattgtcattttcaaagttacagggttgtgcttcctcactgc |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42904522 |
tattgattgtaatgagtagtgaaggacatacatatattgttcaacaaagcagtcacggcattgtcattttcaaagttacagggttgtgcttcctcactgc |
42904423 |
T |
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| Q |
151 |
tgaacaaaggtacatatatctctttatcgtcctttttcatcatttcctatagtaatttacattgaagatattttctagggttttct |
236 |
Q |
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| T |
42904422 |
tgaacaaaggtacatatatctctttatcgtcctttttcatcatttcctatagtaatttacattgaagatattttctagggttttct |
42904337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 42904588 - 42904559
Alignment:
| Q |
8 |
catcatcagatttaatattatcagtattaa |
37 |
Q |
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| T |
42904588 |
catcatcagatttaatattatcagtattaa |
42904559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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