View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19648_high_4 (Length: 497)
Name: NF19648_high_4
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 105 - 489
Target Start/End: Complemental strand, 39603658 - 39603270
Alignment:
| Q |
105 |
gtttttgaggtgctgagttttgctacacaaaatatatttataggatgtgtgtttatgtttatattttccttatgtctattgtatgaattgtaaattgtag |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| || |||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
39603658 |
gtttttgaggtgctgagtttttctacacaaaatatatgtataggatgtgtgtttgtgtctacattttcattatgtctattgtatgaattataaattgtag |
39603559 |
T |
|
| Q |
205 |
ctttgaaacctatttatggaacaagaaatttgtgtttgattatatctaccacttgaactccaaggtgattgaaacaattatcaagttcaaggtgattgaa |
304 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39603558 |
ctttgaaacctatgtatggaacaagaattttgtgcttgcttatgtctactacttgaactccaaggtgattgaaacaattatcaagtttaaggtgattgaa |
39603459 |
T |
|
| Q |
305 |
acaatcatgatttggatcttacttatttgattttattttttagatatggagtcttcatgttctccacaatccaagatacca--cacac-ttcatctgcta |
401 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| ||| ||||||| ||||| ||||| ||| || |||||||| |
|
|
| T |
39603458 |
acaatcatgatttagatcttacttatttgattttattttgtagatatggagttttcacgttgtccacaacccaagttaccatttccacttttatctgcta |
39603359 |
T |
|
| Q |
402 |
cctctaaggaagaaccaaaggcttcactagttaatgaaggaatgacgaatatacaagaaatagcagatg-gagaaaggttgtctctgct |
489 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39603358 |
cctctaagggagaaccaaaggtttcactagttaatgacaaaatgatgaatataaaagaaatagcagatgagagaaaggttgtctctgct |
39603270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 39603700 - 39603663
Alignment:
| Q |
20 |
tacaagtgagtgttgtacttgcatcttgttgtttttgc |
57 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39603700 |
tacaagtgagtgttgtacttgcatctctttgtttttgc |
39603663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 270 - 484
Target Start/End: Complemental strand, 21827749 - 21827531
Alignment:
| Q |
270 |
tgattgaaacaattatcaagttcaaggtgattgaaacaatcatgatttggatcttacttatttgattttattttttagatatggagtcttcatgttctcc |
369 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
21827749 |
tgattgaaacagttatcaagtttaaggtgattgaaacaatcatgatttggatcttacttatttgattttattttgtagatatggagtcttcatgttgtcc |
21827650 |
T |
|
| Q |
370 |
acaatccaagatacca---cacacttcatctgctacctctaaggaagaaccaaaggcttcactagttaatgaaggaatgacgaatatacaagaaatagca |
466 |
Q |
| |
|
|||||||||| | ||| | |||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
21827649 |
acaatccaagttgccatttccaactttatctgctacctctaagggagaaccaaaggtttcactagttaatgacggaatgatgaatatacaagaaatagcg |
21827550 |
T |
|
| Q |
467 |
gatg-gagaaaggttgtct |
484 |
Q |
| |
|
|||| ||||||| |||||| |
|
|
| T |
21827549 |
gatgagagaaagcttgtct |
21827531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 21827905 - 21827774
Alignment:
| Q |
105 |
gtttttgaggtgctgagtttt-gctacacaaaatatatttataggat----gtgtgtttatgtttatattttccttatgtctattgtatgaattgtaaat |
199 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| |||||||| |||||||| ||| || |||||| |||||||||||||||||| ||||||| |
|
|
| T |
21827905 |
gtttttgaggtgctgattttttgctacacaaaatatatgtataggatcgatgtgtgtttgtgtctacattttctttatgtctattgtatgaactgtaaat |
21827806 |
T |
|
| Q |
200 |
tgtagctttgaaacctatttatggaacaagaa |
231 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |
|
|
| T |
21827805 |
tgtagctttgaaacctatgtatggaacaagaa |
21827774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 489
Target Start/End: Complemental strand, 43022325 - 43022162
Alignment:
| Q |
330 |
tttgattttattttttagatatggagtcttcatgttctccacaatccaagatacca----cacacttcatctgctacctctaaggaagaaccaaaggctt |
425 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| ||||| ||||||||||| || ||||||||||||||||| |||| ||||||||||| || |
|
|
| T |
43022325 |
tttgattttattttccagatatggagtcttctcgttgcccacagcccaagataccatcttca-acttcatctgctacctccaagggagaaccaaaggttt |
43022227 |
T |
|
| Q |
426 |
cactagttaatgaaggaatgacgaatatacaagaaatagcagatg-gagaaaggttgtctctgct |
489 |
Q |
| |
|
||| |||||||||||||||||| |||||||| |||||||| | || || ||||| |||||||||| |
|
|
| T |
43022226 |
cacaagttaatgaaggaatgacaaatatacaggaaatagctgctgagataaaggatgtctctgct |
43022162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 42812035 - 42811989
Alignment:
| Q |
282 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42812035 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
42811989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 43022414 - 43022368
Alignment:
| Q |
282 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43022414 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
43022368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 464
Target Start/End: Complemental strand, 42811883 - 42811808
Alignment:
| Q |
389 |
acttcatctgctacctctaaggaagaaccaaaggcttcactagttaatgaaggaatgacgaatatacaagaaatag |
464 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||| ||||| |||||||||||||||| | |||||||| ||||||| |
|
|
| T |
42811883 |
acttcatctgcaacctccaagggagaaccaaaggtttcacaagttaatgaaggaatggcaaatatacaggaaatag |
42811808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 35061082 - 35061042
Alignment:
| Q |
285 |
tcaagttcaaggtgattgaaacaatcatgatttggatctta |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35061082 |
tcaagttcaaggtgattgaaacaatcatgatttggatctta |
35061042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University