View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19648_high_8 (Length: 452)
Name: NF19648_high_8
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 24653575 - 24654004
Alignment:
| Q |
17 |
atcaaacacacacaataaactgtgcaggaaaaaagtaaatgcatatcatatggaaaaagaaacagtagtaagtgaaatatttagaagattcatggattgt |
116 |
Q |
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| T |
24653575 |
atcaaacacacacaataaactgtgcaggaaaaaagtaaatgcatatcatatggaaaaagaaacagtagtaagtgaaatatttagaagattcatggattgt |
24653674 |
T |
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| Q |
117 |
attatatgaaatatcagaccctaaataattttttatacaaacatctagagtatgttctggagaaagctaaaagtctgtttgatgtcaatatagccatt-- |
214 |
Q |
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| T |
24653675 |
attatatgaaatatcagaccctaaataattttttatacaaacatctagagtatgttctggagaaagctaaaagtctgtttgatgtcaatatagccattat |
24653774 |
T |
|
| Q |
215 |
---ccaaatcaggttccccagctccaaatttagctttatttttataaaaggaaagatgtataaatatgagcctatagttattagaagacaaaagagatag |
311 |
Q |
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| T |
24653775 |
attccaaatcaggttccccagctccaaatttagctttatttttataaaaggaaagatgtataaatatgagcctatagttattagaagacaaaagagatag |
24653874 |
T |
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| Q |
312 |
attacttagcttcatcctaaaaatccttgagcttggaatccttcaacaaataattgattggtaagtcacacagtgtgactcacactcatactgattcgct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24653875 |
attacttagcttcatcctaaaaatccttgagcttggaatccttcaacaaataattgattggtaagtcacacagtgtgactcacactcatactgattcgct |
24653974 |
T |
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| Q |
412 |
aaaaacatcatttaaaatgaacaagctgat |
441 |
Q |
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| T |
24653975 |
aaaaacatcatttaaaatgaacaagctgat |
24654004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 24631952 - 24631985
Alignment:
| Q |
73 |
aagaaacagtagtaagtgaaatatttagaagatt |
106 |
Q |
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| T |
24631952 |
aagaaacattagtaagtgaaatatttagaagatt |
24631985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 106
Target Start/End: Original strand, 41806275 - 41806305
Alignment:
| Q |
76 |
aaacagtagtaagtgaaatatttagaagatt |
106 |
Q |
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| T |
41806275 |
aaacagtagtaagtgaaatatttagaagatt |
41806305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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