View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19648_high_9 (Length: 421)
Name: NF19648_high_9
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 28088126 - 28088517
Alignment:
| Q |
17 |
agatcctactatactcctagttcaattttgagtatataccaagttactttctagagctgaatgaagaagagtatttagatgggttgtttctgttctgaga |
116 |
Q |
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| T |
28088126 |
agatcctactatactcctagttcaattttgagtatatacctagttactttctagagctgaatgaagaagagtatttagatgggttgtttctgttctgaga |
28088225 |
T |
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| Q |
117 |
aagggcccttaagagtgtggtcgttggtgtttagatggcttggtattggttttattactccatcgaacctttttgtacatttggaatgttttatagagga |
216 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |
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| T |
28088226 |
aagggcccttaagagtgtggtcgttagtgtttagatggcttggtattggttttattactccatcaaacttttttctacatttggaatgttttatagagga |
28088325 |
T |
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| Q |
217 |
ggctcagttgtagaagcttagaaggagttattggttaattcggcactggtttgggttcttcggaaggcatgaaacgattatatattcaggaataggttgt |
316 |
Q |
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| T |
28088326 |
ggctcagttgtagaagcttagaaggagttattggttaattcggcactggtttgggttcttcggaaggcatgaaacgatcatatattcaggaataggttgt |
28088425 |
T |
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| Q |
317 |
gtgtactagacagataccttagttgttgccggggggttgtcgtagctgctattgttttttaactcagtttgtcagtatttagctcttctgtg |
408 |
Q |
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| T |
28088426 |
gtgtactagacagataccttagttgttgccggggggttgtcgtagctgcttttgttttttaactcagtttgtcagtatttagctcttctgtg |
28088517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 28105457 - 28105154
Alignment:
| Q |
17 |
agatcctactatactccta----gttcaattttgagtatataccaagttactttctagagctgaatgaagaagagtatttagatgggttgtttctgttct |
112 |
Q |
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| T |
28105457 |
agatcctactacactcctaaaaagttcaattttgagtatatacctagttactttctagagctgaatgaagatgagtatttagatgggttgtttctgttct |
28105358 |
T |
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| Q |
113 |
gagaaagggcccttaagagtgtggtcgttggtgtttagatggcttggtattgg-ttttattactccatcgaacc---tttttgtacatttggaatgtttt |
208 |
Q |
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| T |
28105357 |
gagaaagggccctt-agagtgtggccgttggtgtttagatgggttggtattggtttttattactccatcaaaccttttttttgtacatttggaatgtttt |
28105259 |
T |
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| Q |
209 |
atagaggaggctcagttgtagaagcttagaaggagttattggttaattcggcactggtttgggttcttcggaaggcatgaaacgattatatattcaggaa |
308 |
Q |
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|||| ||| ||| || | ||||| |||||||| |||||||||||||| |||||||||||||||| ||| | |||| ||| ||| ||||||||| ||| |
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| T |
28105258 |
ataggagagtctcggtcgaagaagtttagaaggggttattggttaatttggcactggtttgggttattctgtaggcgaaaaatgatcatatattcaagaa |
28105159 |
T |
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| Q |
309 |
taggt |
313 |
Q |
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||||| |
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| T |
28105158 |
taggt |
28105154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 26643152 - 26643082
Alignment:
| Q |
17 |
agatcctactatactccta----gttcaattttgagtatataccaagttactttctagagctgaatgaaga |
83 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26643152 |
agatcctactatactcctacaaagttcagttttgagtatatacctagttactttctagagctgaatgaaga |
26643082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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