View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19648_low_1 (Length: 983)
Name: NF19648_low_1
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 42079387 - 42079042
Alignment:
| Q |
20 |
aagacaactcttaaatatcaattcgttcgctttttaatgtgatgtttgccaacacaacttacttttttaaaggttctaaacttccctttaaagaacgacc |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42079387 |
aagacaacccttaaatatcaattcgttcgctttttaatgccatgtttgccaacacaacttacttttttaaaggttctaaacttccctttaaagaactacc |
42079288 |
T |
|
| Q |
120 |
atccaacctgcataattgtccttgtcctatgtgcgctacaaatgtcaatgtccatggcttactatgaccaaccttgcccgatcaaataaattcactgtct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42079287 |
atccaacctgcataattgtccttgtcctatgtgcgctacaaatgtcaatgcccatcgcttactatgaccaaccttgcccgatcaaataaattcactgtct |
42079188 |
T |
|
| Q |
220 |
aatgtatcacattatcatgtaaagttgcaatagattggtgcatatgcaaaggtacaactctaattcctggagtcaagtcaacaggtcaaacagatgaata |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | |||| ||| | |
|
|
| T |
42079187 |
aatgtatcacattatcatgtaaagttgcaataaattggtgcatatgcaaaggtacaactctaattcctggagtcaagtcaatagcaaaggcagaggaaaa |
42079088 |
T |
|
| Q |
320 |
tgtgggtgctcttggttggcgactttcatcagacaagctgcttcag |
365 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
42079087 |
tttgggtgctcttggttggcgtctttcatcagaccagctgcttcag |
42079042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 363 - 563
Target Start/End: Complemental strand, 42079012 - 42078812
Alignment:
| Q |
363 |
caggattaatggattttccaaacctgcagttggagcggcttcgggaaagaacattttccaaacaatgtgaacatgttattcttttcaaaaattatagttc |
462 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| |||| | || | |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42079012 |
caggattaaaggattttccaaaccttcagttggagctgcttggagacaaaacattttccaaaccatgtgaacatgttattcttttcaaaaattatagttc |
42078913 |
T |
|
| Q |
463 |
agatgtataaaggttaaatggttaatgaagtttgtagatattagtgtctcacacgacttctatttcctataccagataatatctacatcaaagcttcgga |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42078912 |
agatgtataaaggttaaatggttaatgaagtttgtagatattagtgtctcacacgacttctatttcctataccagataatatctacatcaaagcttcgga |
42078813 |
T |
|
| Q |
563 |
a |
563 |
Q |
| |
|
| |
|
|
| T |
42078812 |
a |
42078812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 51 - 365
Target Start/End: Complemental strand, 42081783 - 42081471
Alignment:
| Q |
51 |
ttttaatgtgatgtttgccaacacaacttacttttttaaaggttctaaacttccctttaaagaacgaccatccaacctgcataattgtccttgtcctatg |
150 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||| ||||||| | |
|
|
| T |
42081783 |
ttttaatgtcgtgttttccaacacagcttacttttttaaaggttttaaacttccctttaaagaacgaccaaccaacccacataactgtccatgtcctagg |
42081684 |
T |
|
| Q |
151 |
tgcgctacaaatgtcaatgtccatggcttactatgaccaaccttgcccgatcaaataaattcactgtctaatgtatcacattatcatgtaaagttgcaat |
250 |
Q |
| |
|
|| | |||||||| ||| ||| || |||||| |||||||||||||||||||||||||||||| ||||||||| || |||| |||||| | |||||||| |
|
|
| T |
42081683 |
tgtgttacaaatgacaacgtcgatcacttactctgaccaaccttgcccgatcaaataaattcattgtctaatgcat--cattgtcatgtcaggttgcaat |
42081586 |
T |
|
| Q |
251 |
agattggtgcatatgcaaaggtacaactctaattcctggagtcaagtcaacaggtcaaacagatgaatatgtgggtgctcttggttggcgactttcatca |
350 |
Q |
| |
|
| |||||||||||||||||||||||| || |||||||||||||||||||| | ||| |||| ||| || |||||||||| |||||||| || || ||| |
|
|
| T |
42081585 |
aaattggtgcatatgcaaaggtacaattccaattcctggagtcaagtcaataacacaagcagaggaaaatttgggtgctctgggttggcgtctctcctca |
42081486 |
T |
|
| Q |
351 |
gacaagctgcttcag |
365 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
42081485 |
aacgagctacttcag |
42081471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University