View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19648_low_11 (Length: 361)
Name: NF19648_low_11
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 33 - 342
Target Start/End: Complemental strand, 28534763 - 28534454
Alignment:
| Q |
33 |
ggatatgtttgtgacaagttggcaaggcaagtggacatgactataataaggtaattattaattaagaagctatgaatttgttttggataacaaaataaag |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28534763 |
ggatatgtttgtgacaagttggcaaggcaagtggacatgactataataaggtaattattaattaagaagctatgaatttgttttggataacaaaataaag |
28534664 |
T |
|
| Q |
133 |
ttaagtatgtttttgtacttgatttctattttactgtttgtgtatgaagctgtaaacgtgttaatttttgtttggattgtaaaactagctgtgtgtgtgc |
232 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28534663 |
ttaagtatgtttttgtacttgaattctattttactatttgtgtatgaagctgtaaacgtgttaatttttgtttggattgtaaaactagctgtgtgtgtgc |
28534564 |
T |
|
| Q |
233 |
tttgcatagaactttttatcttctttttccttttctaaacattatactttaatgtataatacattcctttctatatctagtcaattttaacacccattaa |
332 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28534563 |
tttgcatagaactctttaacttctttttccttttctaaacattatactttaatgtataatacattcctttctatatctagtcaattttaacacccattaa |
28534464 |
T |
|
| Q |
333 |
accatgcatt |
342 |
Q |
| |
|
|||||||||| |
|
|
| T |
28534463 |
accatgcatt |
28534454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University