View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19648_low_13 (Length: 351)
Name: NF19648_low_13
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 344
Target Start/End: Original strand, 47063105 - 47063432
Alignment:
| Q |
14 |
gttatttctactatctactctccactctcacccccaacttggcatttgttgtactaagtagtatttttcaattccttgcaaactcacagtcagtatctct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47063105 |
gttatttctactatctactctccactctcacccccaacttggcatttgttgtactaagtagtatttttcaattccttgcaaactcacattcagtatctct |
47063204 |
T |
|
| Q |
114 |
ctatacaattccttgcatccaataataataagatggacgatcacaatcacaaacgcacgctcttgtcctcccactcttgtctcccctagttttcatcaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47063205 |
ctatacaattccttgcatccaataataataagatggacgatcacaatcacaaacgcacactcttgtcctcccactcttgtctcccctagttttcatcaat |
47063304 |
T |
|
| Q |
214 |
tgttacagtgttgttgtgcttttttattagaaaatcttctcaagcaatatacatttggatgctaatgtattggtatttttgtcatttcagtttcattctg |
313 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47063305 |
tgttacag---tgttgtgcttttttattagaaaatcttctcaaacaatatacatttggatgctaatgtattggtatttttgtcatttcagtttcattctg |
47063401 |
T |
|
| Q |
314 |
atcaatcgtacataaaatcagacctatgctt |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47063402 |
atcaatcgtacataaaatcagacctatgctt |
47063432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University