View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19648_low_14 (Length: 341)
Name: NF19648_low_14
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 38744236 - 38744544
Alignment:
| Q |
1 |
atgatccctgtagaatattctgtcattcaaatgaaaagagaagtagggtacaaaagatgactcaagtgtgttggaggttttctgttgtgtcttattgagt |
100 |
Q |
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| T |
38744236 |
atgatccctgtagaatattctgtcattcaaatgaaaagagaagtagggtacaaaagatgactcaagtgtgttggaggttttctgttgtgtcttattgagt |
38744335 |
T |
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| Q |
101 |
aaactctagtgccatatttgtgtagagcaacagcaacggacaggtgaatttgtggcattatctatatgccacttgaacattttattattgtatataataa |
200 |
Q |
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| T |
38744336 |
aaactctagtgccatatttgtgtagagcaacagcaacggacaggtgaatttgtggcattatctatatgccacttgaacattttattattgtatataataa |
38744435 |
T |
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| Q |
201 |
ttctggtagcctgcagatatatgaagattgcagatattaaaggaattaattaaaagtattatttcaacacatgttattttattaagaaaaaggcatatat |
300 |
Q |
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| T |
38744436 |
ttctggaagcc-----------------tgcagatattaaaggaattaattaaaagtattattttaacacatgttattttattaagaaaaaggcatatat |
38744518 |
T |
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| Q |
301 |
gatagagcaacttgagggatgtaatt |
326 |
Q |
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| T |
38744519 |
gatagagcaacttgagggatgtaatt |
38744544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 47 - 267
Target Start/End: Original strand, 38740395 - 38740622
Alignment:
| Q |
47 |
ggtacaaaagatgactcaagtgtgttggaggttttctgttgtgtcttattgagtaaactctagtgccatatttgtgtagagcaacagcaacggacaggtg |
146 |
Q |
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| T |
38740395 |
ggtacaaaagatgactcaaatttgttggaggttttctgttgtgtcctattgagtgaactctagtgccacatttatataggtcatgagcaacggacagggt |
38740494 |
T |
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| Q |
147 |
aatttgtggcattatctatatgc-------cacttgaacattttattattgtatataataattctggtagcctgcagatatatgaaga--ttgcagatat |
237 |
Q |
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| T |
38740495 |
aatttgtgaca-tatc-atctccggcgcagcacttaagcattttattattgtgtaaaatgattctggaagcctgcaaatatatgaagattttagagatac |
38740592 |
T |
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| Q |
238 |
taaaggaattaattaaaagtattatttcaa |
267 |
Q |
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| T |
38740593 |
taaaggaattaattaaaagtattacttcaa |
38740622 |
T |
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