View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19648_low_16 (Length: 332)
Name: NF19648_low_16
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 14002139 - 14002441
Alignment:
| Q |
17 |
acacatccaatgagatacatcaaacatgtgcagattctaccctgttattgattgattgtgctttaagtgcaacccaaccagccttatttcttccacgtaa |
116 |
Q |
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| T |
14002139 |
acacatccaatgagatacatcaaacatgtgcagattctaccctgttattgattgattgtgctttaagtgcaacccaaccagccttatttcttccacgtaa |
14002238 |
T |
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| Q |
117 |
agcagaattttcaattaattttggaaaattaattgtgtctcctcgttatcataatatcatctatgcaaagtgaaatctatgctaatccagtatgagctat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14002239 |
agcagaattttcaattaattttggaaaattaattgtgtctcctcgttatcataatatcatctatgcaaagtgaaatctatgctaatccagtatgagctat |
14002338 |
T |
|
| Q |
217 |
ttgatgtctaattttgtaggatctaactgaaacatctcttactgtcacattttctctaagcaccttatgttgtgtcctattccttacgtagtgtcacaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14002339 |
ttgatgtctaattttgtaggatctaactgaaacatctcttactgtcacattttctctaagcaccttatgttgtgtcctattccttacgtagtgtcacaca |
14002438 |
T |
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| Q |
317 |
ggt |
319 |
Q |
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| T |
14002439 |
ggt |
14002441 |
T |
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