View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19648_low_20 (Length: 306)
Name: NF19648_low_20
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 23 - 294
Target Start/End: Complemental strand, 2558831 - 2558560
Alignment:
| Q |
23 |
tagtgattcaaattgatgcattttaaggagtgaatattgcttaaggtgattcataacatttttatgtcttactcaccgttattgtattctcactttcttc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2558831 |
tagtgattcaaattgatgcattttaaggagtgaatattgcttaaggtgattcatagtatttttatgtcttactcaccgttattgtattctcactttcttc |
2558732 |
T |
|
| Q |
123 |
aattcttacaagttgtagcacctaccttataattgtcacacatatgatcaagtaattatgctcatccatgtcaatttctgcatcactttcttcatcaaaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2558731 |
aattcttacaagttgtagcacctaccttataattgtcacacatatgatcaagtaattatgctcatccatgtcaatttctgcatcactttcttcatcaaaa |
2558632 |
T |
|
| Q |
223 |
gagtaattatgctcatccatttcctcactttcttcaatttcttcattgctgtgaacaatgtattcttcatct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2558631 |
gagtaattatgctcatccatttcctcactttcttcaatttcttcattgctgtgaacaatgtattcttcatct |
2558560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 23 - 294
Target Start/End: Complemental strand, 19330627 - 19330361
Alignment:
| Q |
23 |
tagtgattcaaattgatgcattttaaggagtgaatattgcttaaggtgattcataacatttttatgtcttactcaccgttattgtattctcactttcttc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19330627 |
tagtgattcaaattgatgcattttaaggagtgaatattgcttaaggtgattcattacatttttatgtcttactcaccgtcattgtattctcactttctta |
19330528 |
T |
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| Q |
123 |
aattcttacaagttgtagcacctaccttataattgtcacacatatgatcaagtaattatgctcatccatgtcaatttctgcatcactttcttcatcaaaa |
222 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19330527 |
aattcttacaagttatagcacctaccttataattgtcacacatatgatcaagtaattatgctcatccatgtcaatttctgcatcactttctt-----aaa |
19330433 |
T |
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| Q |
223 |
gagtaattatgctcatccatttcctcactttcttcaatttcttcattgctgtgaacaatgtattcttcatct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19330432 |
gagtaattatgctcatccatttcctcactttcttcaatttcttcattgctgtgaacaatgtattcttcatct |
19330361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 54270130 - 54270283
Alignment:
| Q |
23 |
tagtgattcaaattgatgcattttaaggagtgaatattgcttaaggtgattcataacatttttatgtcttactcaccgttattgtattctcactttcttc |
122 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54270130 |
tagtgattcaaattgatgcattttaaggagtgaatatt---taaggtgattcataacatttttatgtcttgatcaccgttattgtattctcactttcttc |
54270226 |
T |
|
| Q |
123 |
aattcttacaagttgtagcacctaccttataattgtcacacatatgatcaagtaatt |
179 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
54270227 |
aattcttacaagttataacacctaccttataattgtcacacatatgatcaagtaatt |
54270283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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