View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19648_low_24 (Length: 266)

Name: NF19648_low_24
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19648_low_24
NF19648_low_24
[»] chr2 (2 HSPs)
chr2 (11-225)||(32785382-32785595)
chr2 (150-220)||(1037409-1037479)
[»] chr4 (3 HSPs)
chr4 (156-224)||(547193-547261)
chr4 (156-194)||(532493-532531)
chr4 (168-226)||(641190-641248)
[»] chr8 (3 HSPs)
chr8 (165-221)||(17636157-17636213)
chr8 (165-224)||(17627819-17627878)
chr8 (165-221)||(17643357-17643413)
[»] chr3 (1 HSPs)
chr3 (165-222)||(51113544-51113601)
[»] chr1 (2 HSPs)
chr1 (168-225)||(52082860-52082917)
chr1 (156-224)||(19468253-19468321)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 32785382 - 32785595
Alignment:
Q  11 aaaatatccaatgccggtatagcttctgctctccgtgagacaccaatattgcaagtccgacaaacgtgcaaccttgtttacactccttaggaactgctct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785382 aaaatatccaatgccggtatagcttctgctctccgtgagacaccaatattgcaagtccgacaaacgtgcaaccttgtttacactccttaggaactgctct 32785481  T
Q  111 tcacttaatgagattagaatggcagacaaaggtacatgtgaaaaaagtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagt 210  Q
    ||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785482 tcacttaataagattagaatggcagacaaaggtacatg-ggaaaaagtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagt 32785580  T
Q  211 ttctccatttggctc 225  Q
    |||||||||||||||    
T  32785581 ttctccatttggctc 32785595  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 1037409 - 1037479
Alignment:
Q  150 gaaaaaagtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagtttctccattt 220  Q
    ||||| |||||| | ||||||||||||| |||||||| |||| ||| || |||||||||||  ||||||||    
T  1037409 gaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccattt 1037479  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 547261 - 547193
Alignment:
Q  156 agtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggct 224  Q
    |||||| | |||||||||||||| | |||||||||||||| ||||||||| |||| |||||||||||||    
T  547261 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccatttggct 547193  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 532531 - 532493
Alignment:
Q  156 agtgtacaaaattctaattctttgatggattttgttgta 194  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  532531 agtgtacaacattctaattctttgaaggattttgttgta 532493  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 641248 - 641190
Alignment:
Q  168 tctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctca 226  Q
    ||||||||||| || ||||||||||||  || ||| ||||||| |||||||||||||||    
T  641248 tctaattctttcatagattttgttgtacgccgtcagttaaagtgtctccatttggctca 641190  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 17636157 - 17636213
Alignment:
Q  165 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttg 221  Q
    ||||||||||||| |||| |||||||||||| ||||||||| |||| ||||||||||    
T  17636157 aattctaattcttcgatgaattttgttgtaaaccctcaatttaagtctctccatttg 17636213  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 17627819 - 17627878
Alignment:
Q  165 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggct 224  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||| | |||| ||||||||    
T  17627819 aattctaattctttggtggatttcgttgtaagccctcaattaaaatctctctatttggct 17627878  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 17643357 - 17643413
Alignment:
Q  165 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttg 221  Q
    |||||||||||||||||| ||||  || ||| ||||||||| |||| ||||||||||    
T  17643357 aattctaattctttgatgaatttcattctaagccctcaatttaagtctctccatttg 17643413  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 51113544 - 51113601
Alignment:
Q  165 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttgg 222  Q
    ||||||||||||||||||| |||||||||||  || |||||||||| |||||| ||||    
T  51113544 aattctaattctttgatgggttttgttgtaagaccgcaattaaagtctctccagttgg 51113601  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 52082917 - 52082860
Alignment:
Q  168 tctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctc 225  Q
    |||||||||||| |||| |||||||||  ||||||| | |||| ||||||||||||||    
T  52082917 tctaattctttgctggactttgttgtataccctcaagtgaagtctctccatttggctc 52082860  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 19468253 - 19468321
Alignment:
Q  156 agtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggct 224  Q
    |||||| | |||||| ||||||||  |||||||| |||| ||||||||||||||| |||| | ||||||    
T  19468253 agtgtagagaattctgattctttgccggattttggtgtattccctcaattaaagtatctctacttggct 19468321  T

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