View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19648_low_5 (Length: 480)
Name: NF19648_low_5
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 184 - 464
Target Start/End: Complemental strand, 18151467 - 18151187
Alignment:
| Q |
184 |
ctcaattcaactctcatctctattatgatattcaggatgtctatcttatatgtttataatagacattataatctatcgagttcgaccttagaaagtttta |
283 |
Q |
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| T |
18151467 |
ctcaattcaactctcatctctattatgatattcaggatgtctatcttatatgtttctaatagacattataatctatcgagttcgaccttagaaagtttta |
18151368 |
T |
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| Q |
284 |
caacgaaaatatgagaactatctatcactatcatggtggttgcaatgttggatcatttgttgataagcgctataaagttcataatataaaaagatcaaaa |
383 |
Q |
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| T |
18151367 |
caacgaaaatatgagaactatctatcactatcatggtggttgcaatgttggatcatttgttgataagcgctataaagttcataatataaaaagatcaaaa |
18151268 |
T |
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| Q |
384 |
tgtatgggatgacgcaacttttcagagtcaccaggtacaaatcctatggacacacttctaatgctagaggtatcaagattc |
464 |
Q |
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| T |
18151267 |
ggtatgggatgacgcaacttttcagagtcaccaggtacaaatcctatggacacacttctaatgctagaggtatcaagattc |
18151187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 18151650 - 18151509
Alignment:
| Q |
1 |
gttgaattctttggtgacgatctcaatggagtcggttatagtgatcatgctgttgtgaaaaaatatgatctacgtgctaactttacttttcttataggct |
100 |
Q |
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| T |
18151650 |
gttgaattctttggtgacgatctcaatgcagtcggttatagtgatccggctgttgtgaaaaaatatgatctatgtgctaactttacttttcttataggct |
18151551 |
T |
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| Q |
101 |
tctgatccatgaatttgaatttctagcacacctttggctaca |
142 |
Q |
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| T |
18151550 |
tctgatccatgaatttgaatttctagcacacctttggctaca |
18151509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 240 - 417
Target Start/End: Complemental strand, 18159144 - 18158967
Alignment:
| Q |
240 |
taatagacattataatctatcgagttcgaccttagaaagttttacaacgaaaatatgagaactatctatcactatcatg--gtggttgcaatgttggatc |
337 |
Q |
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| T |
18159144 |
taatagacattctgatctatcaaatttgaccttaaaaagctctacaagaaaaatatgagaactatctatcactatcatggtgtggttgcaatgttggatc |
18159045 |
T |
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| Q |
338 |
atttgttgataagcgctataaagttcataatataaaaagatcaaaatgtatgggatgacgcaac-ttttcagagtcaccag |
417 |
Q |
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| T |
18159044 |
atttgttgat--gcactataaagttcataatataaaaagatc-aaagctatgggatggcgcaactttttcagagtcaccag |
18158967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 432
Target Start/End: Complemental strand, 18162695 - 18162524
Alignment:
| Q |
261 |
gagttcgaccttagaaagttttacaacgaaaatatgagaactatctatcactatcatggtggttgcaatgttggatcatttgttgataagcgctataaag |
360 |
Q |
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||||| |||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||||| || | ||||||| ||| |||| |
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| T |
18162695 |
gagtttgaccttagaaagttttgcaagaaaaatgtaagaactatctatcactatcatggtggttgcaatgttggaacagtgcttgataaagactacaaag |
18162596 |
T |
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| Q |
361 |
ttcataatataaaaagatcaaaatgtatgggatgacgcaac-ttttcagagtcaccaggtacaaatcctatgg |
432 |
Q |
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| T |
18162595 |
ttcatggtataaagggat-taaaggtattggatggctcaactttttctgagtcaccaggtactaatcctatgg |
18162524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 18335033 - 18335110
Alignment:
| Q |
1 |
gttgaattctttggtgacgatctcaatggagtcggttatagtgatcatgctgttgtgaaaaaatatgatctacgtgct |
78 |
Q |
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| T |
18335033 |
gttgagttctttggtggcgaactcaatggagtcagttatagtgatcctgctactgtgaaaaaatatgctcgacgtgct |
18335110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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