View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19648_low_6 (Length: 471)
Name: NF19648_low_6
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19648_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 41839560 - 41840003
Alignment:
| Q |
19 |
gaattggtttaaactttaaactatggtcgcggttacagacttgtaattatactgtaattaa-gatattgcggacaactgcagataaatgcaactaccgtt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41839560 |
gaattggtttaaactttaaactatggtcgcggttacagacttgtaattatactgtaattcttgatattgcggacaactgcagataaatgcaactaccgtt |
41839659 |
T |
|
| Q |
118 |
gtggttgctataagttgtagaggtttccaatttccaaagcctttacaatgtcacggtctttgcaggttgcaatttaggactatactaaataataagcaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41839660 |
gtggttgctataagttgtagaggtttccaatttccaaagcctttacaatgtcacggtctttgcaggttgcaatttaggactatactaaaaaataagcaat |
41839759 |
T |
|
| Q |
218 |
aataattttagtcttatcatatttataggtttattctcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41839760 |
aataattttagtcttatcatatttataggtttattctcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaa |
41839859 |
T |
|
| Q |
318 |
agaaatcttcttcctcgcctgattcttcgaacaacttacatgattttctgtggatttctggcagccatgttgccgttttttggagacatcaatggcgtgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41839860 |
agaaatcttcttcctcgcctgattcttcgaacaacttacatgattttctgtggatttctggcagccatgttgccgttttttggagacatcaatggcgtgg |
41839959 |
T |
|
| Q |
418 |
ttggtgctgttggtttcattcctctggattttgtcctgcctatg |
461 |
Q |
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| T |
41839960 |
ttggtgctgttggtttcattcctctggattttgtcctgcctatg |
41840003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 41833373 - 41833744
Alignment:
| Q |
19 |
gaattggtttaaactttaaactatggtcgcggttacagacttgtaattatactgtaattaa-gatattgcggacaactgcagataaatgcaactaccgtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41833373 |
gaattggtttaaactttaaactatggtcgcggttacagacttgtaattatactgtaattcttgatattgcggacaactgcagataaatgcaactaccgtt |
41833472 |
T |
|
| Q |
118 |
gtggttgctataagttgtagaggtttccaatttccaaagcctttacaatgtcacggtctttgcaggttgcaatttaggactatactaaataataagcaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41833473 |
gtggttgctataagttgtagaggtttccaatttccaaagcctttacaatgtcacggtctttgcaggttgcaatttaggactatactaaaaaataagcaat |
41833572 |
T |
|
| Q |
218 |
aataattttagtcttatcatatttataggtttattctcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41833573 |
aataattttagtcttatcatatttataggtttattctcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaa |
41833672 |
T |
|
| Q |
318 |
agaaatcttcttcctcgcctgattcttcgaacaacttacatgattttctgtggatttctggcagccatgttg |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41833673 |
agaaatcttcttcctcgcctgattcttcgaacaacttacatgattttctgtggatttctggcagccatgttg |
41833744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 35 - 461
Target Start/End: Original strand, 11651538 - 11651965
Alignment:
| Q |
35 |
taaactatggtcgcggttacagacttgtaattatactgtaattaa-gatattgcggacaactgcagataaatgcaactaccgttgtggttgctataagtt |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
11651538 |
taaactatggtcgcggttacagacttgtaattatactgtaattcttgatattgaggacaactgcagataaatgcaactacagttgtgattgctataagtt |
11651637 |
T |
|
| Q |
134 |
gtagaggtttccaatttccaaagcctttacaatgtcacggtctttgcaggttgcaatttaggactatactaaataataagcaataataattttagtctta |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11651638 |
gtagaggtttccaatttccaaagcctttacaatgtcacggtctttgcaggttgcaatttaggactatactaaataataagcaataataattttagtctta |
11651737 |
T |
|
| Q |
234 |
tcatatttataggtttattctcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaaagaaatcttcttcctc |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11651738 |
tcatatttataggtttattctcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaaagaaatcttcttcctc |
11651837 |
T |
|
| Q |
334 |
gcctgattcttcgaacaacttacatgattttctgtggatttctggcagccatgttgccgttttttggagacatcaatggcgtggttggtgctgttggttt |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11651838 |
gcctgattcttcgaacaacttacatgattttctgtggatttctggcagccatgttgccgttttttggagacatcaatggcgtggttggtgctgttggttt |
11651937 |
T |
|
| Q |
434 |
cattcctctggattttgtcctgcctatg |
461 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
11651938 |
cattcctctggattttgtcctgcctatg |
11651965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 277 - 461
Target Start/End: Original strand, 2841450 - 2841635
Alignment:
| Q |
277 |
agaagaaatcagcagatgtgaagcaagggatgttttccaaaagaaatcttcttcctcgcctgattcttcgaacaacttacatgattttctgtggatttct |
376 |
Q |
| |
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|||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||| |
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| T |
2841450 |
agaagagatcggcagatgtgaagccagagatgttttccaaaagaaatcttcttcctcgcttgactcttcgaacaatttacatgtttttctgtggatttct |
2841549 |
T |
|
| Q |
377 |
ggcagccatgttgccg-ttttttggagacatcaatggcgtggttggtgctgttggtttcattcctctggattttgtcctgcctatg |
461 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2841550 |
ggcagccatgttgccgtttttttggagacatcaatggcatggttggtgctgttggtttcattcctctggattttgttctgcctatg |
2841635 |
T |
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