View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19648_low_7 (Length: 454)

Name: NF19648_low_7
Description: NF19648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19648_low_7
NF19648_low_7
[»] chr7 (14 HSPs)
chr7 (1-439)||(7310993-7311431)
chr7 (5-439)||(7328031-7328465)
chr7 (283-437)||(7306443-7306597)
chr7 (95-231)||(35205915-35206051)
chr7 (343-439)||(35205684-35205780)
chr7 (268-439)||(21210250-21210420)
chr7 (93-203)||(21218727-21218837)
chr7 (105-228)||(21210475-21210598)
chr7 (339-439)||(20415057-20415157)
chr7 (95-199)||(20456445-20456552)
chr7 (96-203)||(20414823-20414933)
chr7 (152-228)||(13888088-13888164)
chr7 (32-72)||(20456379-20456419)
chr7 (339-439)||(20456680-20456780)
[»] chr1 (1 HSPs)
chr1 (340-431)||(31442783-31442874)
[»] scaffold0064 (2 HSPs)
scaffold0064 (334-431)||(24360-24457)
scaffold0064 (153-232)||(24206-24285)
[»] chr2 (1 HSPs)
chr2 (98-183)||(43001478-43001563)
[»] scaffold0128 (3 HSPs)
scaffold0128 (151-183)||(4136-4168)
scaffold0128 (99-167)||(8516-8584)
scaffold0128 (99-167)||(25565-25633)
[»] chr5 (1 HSPs)
chr5 (343-431)||(42298299-42298387)


Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 7311431 - 7310993
Alignment:
Q  1 atttatgaatttgtgattatttcactacatatagggactgagacatacacaaagttgacgctccctccaagtgctgacaagtcgacacatttatcaagtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7311431 atttatgaatttgtgattatttcactacatatagggactgagacatacacaaagttgatgctccctccaagtgctgacaagtcgacacatttatcaagtg 7311332  T
Q  101 tttgtgtgttgatgaactccttctgcttttctcaagatttcaacggaacagattttgttatatggaagatgacagaatttggagacgaccggtcttggac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7311331 tttgtgtgttgatgaactccttctgcttttctcaagatttcaacggaacagattttgttatatggaagatgacagaatttggagacgaccggtcttggac 7311232  T
Q  201 tcagttatttacatttacctatcacaatcttcgaacgaatttaaattcaagagttgtttactcaagattgaaattaaagccgttgcatctttctgaagat 300  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  7311231 tcagttatttacatttagctatcacaatcttcgaatgaatttaaattcaagagttgtttactcgaggttgaaattaaagccgttgcatctttctgaagat 7311132  T
Q  301 ggtgatacaatagtattcggaagctgcatagataaccaagcaattctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatat 400  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7311131 ggtgatacaatagtattcggaagctgcctagataaccaagcaattctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatat 7311032  T
Q  401 gttggttctctatcaaggattatgtcgaaagtctggttt 439  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7311031 gttggttctctatcaaggattatgtcgaaagtctggttt 7310993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 439
Target Start/End: Original strand, 7328031 - 7328465
Alignment:
Q  5 atgaatttgtgattatttcactacatatagggactgagacatacacaaagttgacgctccctccaagtgctgacaagtcgacacatttatcaagtgtttg 104  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||  |||||||  |||||||||||| ||||| ||||||    
T  7328031 atgaatttgtgattgtttcactacatctagggaccgagacatacacaaagttgatgctccctcctggtgctgaggagtcgacacattcatcaaatgtttg 7328130  T
Q  105 tgtgttgatgaactccttctgcttttctcaagatttcaacggaacagattttgttatatggaagatgacagaatttggagacgaccggtcttggactcag 204  Q
    |||||||||||||||||| ||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |     
T  7328131 tgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttggactaaa 7328230  T
Q  205 ttatttacatttacctatcacaatcttcgaacgaatttaaattcaagagttgtttactcaagattgaaattaaagccgttgcatctttctgaagatggtg 304  Q
    || |||||||||| ||||||||| |||| |  |||||||||||||||| ||||||||||  | |||||||||||| | ||||||||||||||||||||||    
T  7328231 ttctttacatttagctatcacaaccttcaagtgaatttaaattcaagatttgtttactcgtggttgaaattaaaggcattgcatctttctgaagatggtg 7328330  T
Q  305 atacaatagtattcggaagctgcatagataaccaagcaattctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttg 404  Q
    ||||||| ||||||| ||||||| |  |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7328331 atacaatcgtattcgcaagctgcctgcataaccaagcaattctctataacttgagaactaatagagtactggaatctagagttaacaaaaagatatgttg 7328430  T
Q  405 gttctctatcaaggattatgtcgaaagtctggttt 439  Q
    || ||||||||||||||||||||||||||||||||    
T  7328431 gtactctatcaaggattatgtcgaaagtctggttt 7328465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 283 - 437
Target Start/End: Complemental strand, 7306597 - 7306443
Alignment:
Q  283 ttgcatctttctgaagatggtgatacaatagtattcggaagctgcatagataaccaagcaattctgtataacttgagaactaatagagtactgaaatcta 382  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7306597 ttgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctagataaccaagcaattctgtataacttgagaactaatagagtactgaaatcta 7306498  T
Q  383 gagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggt 437  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7306497 gagtcaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggt 7306443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 95 - 231
Target Start/End: Complemental strand, 35206051 - 35205915
Alignment:
Q  95 caagtgtttgtgtgttgatgaactccttctgcttttctcaagatttcaacggaacagattttgttatatggaagatgacagaatttggagacgaccggtc 194  Q
    ||||| |||||||| ||| ||||||||| || |||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||| | |||  |||    
T  35206051 caagtatttgtgtgctgaggaactccttttgtttttatcatgatttcaatggaactgattttgttatatggaagatgacagaatttggaaatgacaagtc 35205952  T
Q  195 ttggactcagttatttacatttacctatcacaatctt 231  Q
    ||||||||| ||  ||| ||||| |||||||||||||    
T  35205951 ttggactcaattccttaaatttagctatcacaatctt 35205915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 439
Target Start/End: Complemental strand, 35205780 - 35205684
Alignment:
Q  343 attctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggttt 439  Q
    ||||| ||||||| |||||| ||||||||||||||||||  | ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||    
T  35205780 attctctataactggagaaccaatagagtactgaaatcttcaattaacaataagatatgttggttcactatcaaggattatgtcgaaagcctggttt 35205684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 439
Target Start/End: Complemental strand, 21210420 - 21210250
Alignment:
Q  268 ttgaaattaaagccgttgcatctttctgaagatggtgatacaatagtattcggaagctgcatagataaccaagcaattctgtataacttgagaactaata 367  Q
    ||||||||||||||| |||||||||||||| ||  ||||||||||||||||| || |  | |  | ||||||||| |||| |||||||| |||| |||||    
T  21210420 ttgaaattaaagccggtgcatctttctgaaaatattgatacaatagtattcgtaaacaacctgcaaaaccaagcagttctatataacttcagaaataata 21210321  T
Q  368 gagtactgaaatctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggttt 439  Q
     |||||||||||| | | ||||| | |||||| ||||||||| || | |||||||||||| |||||||||||    
T  21210320 cagtactgaaatccaaaattaaccataagatacgttggttctgtaccgaggattatgtcg-aagtctggttt 21210250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 21218837 - 21218727
Alignment:
Q  93 atcaagtgtttgtgtgttgatgaactccttctgcttttctcaagatttcaacggaacagattttgttatatggaagatgacagaatttggagacgaccgg 192  Q
    |||| ||||||||||||||||||||||||| || |||| ||| |||||||| ||||| ||||| ||||||||| | ||||| ||||||||||| ||   |    
T  21218837 atcaggtgtttgtgtgttgatgaactccttttgtttttatcacgatttcaatggaactgatttggttatatggcaaatgacggaatttggagatgataag 21218738  T
Q  193 tcttggactca 203  Q
    |||||||||||    
T  21218737 tcttggactca 21218727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 21210598 - 21210475
Alignment:
Q  105 tgtgttgatgaactccttctgcttttctcaagatttcaacggaacagattttgttatatggaagatgacagaatttggagacgaccggtcttggactcag 204  Q
    |||||| | ||||| ||| ||| ||| ||| |||||||||||||| |||||||||||||||||||||||| | |||||||| |||  |||||||||||      
T  21210598 tgtgtttaggaacttcttatgcctttatcatgatttcaacggaactgattttgttatatggaagatgacaaagtttggagatgacaagtcttggactcta 21210499  T
Q  205 ttatttacatttacctatcacaat 228  Q
    ||  ||| ||||| ||||||||||    
T  21210498 ttccttaaatttagctatcacaat 21210475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 439
Target Start/End: Original strand, 20415057 - 20415157
Alignment:
Q  339 agcaattctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtt 438  Q
    ||||||||| ||||| | ||||| ||||| |||| ||||| | ||||||||||| || | ||||||||||||||||||   |||||| ||||||||||||    
T  20415057 agcaattctctataattggagaaataatatagtattgaaacccagagttaacaataacaaatgttggttctctatcaactgttatgttgaaagtctggtt 20415156  T
Q  439 t 439  Q
    |    
T  20415157 t 20415157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 20456445 - 20456552
Alignment:
Q  95 caagtgtttgtgtgttgatgaactccttctgcttttctcaagatt---tcaacggaacagattttgttatatggaagatgacagaatttggagacgaccg 191  Q
    |||||||||||||||||||||||||||| || |||| |||  |     ||||||||||  ||||||||||||||||||||||| ||||||| || |||      
T  20456445 caagtgtttgtgtgttgatgaactccttttgtttttatcataacacgatcaacggaaccaattttgttatatggaagatgacaaaatttggggatgacaa 20456544  T
Q  192 gtcttgga 199  Q
    ||||||||    
T  20456545 gtcttgga 20456552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 20414823 - 20414933
Alignment:
Q  96 aagtgtttgtgtgttgatgaactccttctgcttttctcaagattt---caacggaacagattttgttatatggaagatgacagaatttggagacgaccgg 192  Q
    ||||||||||||||| ||||||||||| || |||| |||  || |   ||||||||| |||||| |||||||||||||||   |||||||||| |||  |    
T  20414823 aagtgtttgtgtgttcatgaactccttttgtttttatcataatatgatcaacggaaccgattttattatatggaagatgatgaaatttggagatgacaag 20414922  T
Q  193 tcttggactca 203  Q
    |||||||||||    
T  20414923 tcttggactca 20414933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 13888164 - 13888088
Alignment:
Q  152 attttgttatatggaagatgacagaatttggagacgaccggtcttggactcagttatttacatttacctatcacaat 228  Q
    |||||||||||||||| |||||| |||||||||||||   |||||||||||| ||  ||| ||||| ||||| ||||    
T  13888164 attttgttatatggaaaatgacaaaatttggagacgaaaagtcttggactcaattccttaaatttagctatcgcaat 13888088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 20456379 - 20456419
Alignment:
Q  32 tagggactgagacatacacaaagttgacgctccctccaagt 72  Q
    |||| |||||||||||||||||||||| || ||||||||||    
T  20456379 taggtactgagacatacacaaagttgatgccccctccaagt 20456419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 439
Target Start/End: Original strand, 20456680 - 20456780
Alignment:
Q  339 agcaattctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtt 438  Q
    ||||||||| ||||| | ||||| ||||| |||| ||||| ||| |||||| || |||  | |  ||||||||||||||| |||||| |||||| |||||    
T  20456680 agcaattctctataattggagaaataatatagtattgaaacctaaagttaaaaataagggaagcgggttctctatcaagggttatgttgaaagtttggtt 20456779  T
Q  439 t 439  Q
    |    
T  20456780 t 20456780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 340 - 431
Target Start/End: Complemental strand, 31442874 - 31442783
Alignment:
Q  340 gcaattctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaag 431  Q
    |||||||| ||||| | ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  31442874 gcaattctctataattggagaaataatagagtagtgaaaactagagttaacaaaaagatatgttggttctctataaaccattatgtcgaaag 31442783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 24360 - 24457
Alignment:
Q  334 aaccaagcaattctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaag 431  Q
    |||| ||||||||| ||||| | || || |||||||||| ||||| |||| ||||||||||||||||||||||  ||||| ||  ||||||| |||||    
T  24360 aaccgagcaattctctataattggataaataatagagtagtgaaaactagggttaacaaaaagatatgttggtgatctataaacaattatgttgaaag 24457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 24206 - 24285
Alignment:
Q  153 ttttgttatatggaagatgacagaatttggagacgaccggtcttggactcagttatttacatttacctatcacaatcttc 232  Q
    |||||||||||||||||||||||||| |||||| ||   |||||| ||||| ||  ||| ||||| ||||||| ||||||    
T  24206 ttttgttatatggaagatgacagaatatggagatgaaaagtcttgaactcaattccttaaatttagctatcacgatcttc 24285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 43001563 - 43001478
Alignment:
Q  98 gtgtttgtgtgttgatgaactccttctgcttttctcaagatttcaacggaacagattttgttatatggaagatgacagaatttgga 183  Q
    ||||||||| ||||||||| ||  | || |||| ||| |||||| | ||||| | |||||||||||||||||||| | ||||||||    
T  43001563 gtgtttgtgagttgatgaattcactttgtttttatcatgatttcgagggaactggttttgttatatggaagatgatataatttgga 43001478  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 4136 - 4168
Alignment:
Q  151 gattttgttatatggaagatgacagaatttgga 183  Q
    ||||| |||||||||||||||||||||||||||    
T  4136 gatttggttatatggaagatgacagaatttgga 4168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 8516 - 8584
Alignment:
Q  99 tgtttgtgtgttgatgaactccttctgcttttctcaagatttcaacggaacagattttgttatatggaa 167  Q
    |||||||||||| ||||||||| | ||  ||| ||||||||| || | ||| |||||||||||||||||    
T  8516 tgtttgtgtgttaatgaactccctatgtgtttatcaagatttaaaggaaactgattttgttatatggaa 8584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 25565 - 25633
Alignment:
Q  99 tgtttgtgtgttgatgaactccttctgcttttctcaagatttcaacggaacagattttgttatatggaa 167  Q
    |||||||||||||||||||||| | ||  ||| ||| ||||| || | ||| |||||||||||||||||    
T  25565 tgtttgtgtgttgatgaactccctatgtgtttatcacgatttaaaggaaactgattttgttatatggaa 25633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 431
Target Start/End: Original strand, 42298299 - 42298387
Alignment:
Q  343 attctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaag 431  Q
    ||||| |||||| ||||||| || |||| |  |||| ||||  |||||| |||||||||||||| ||| || || ||||||||||||||    
T  42298299 attctctataacctgagaacaaacagagcaaagaaaactaggattaacagaaagatatgttggtcctcaatgaaagattatgtcgaaag 42298387  T

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