View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19649_high_5 (Length: 338)
Name: NF19649_high_5
Description: NF19649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19649_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 23 - 312
Target Start/End: Complemental strand, 38569124 - 38568835
Alignment:
| Q |
23 |
atcatcacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaagtgaccaaggtaacataaaacc |
122 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38569124 |
atcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaagtgaccaaggtaacataaaacc |
38569025 |
T |
|
| Q |
123 |
atgctacgaaattatattcgttaatgaatgatttctctttttgtcgtagtctagcgtggtaaatcagggagtgtcgtgtccgaacacctgcatatcaaca |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38569024 |
atgctacgaaattatattcgttaatgaatgatttctctttttgtcgtagtctagcgtggtaaatcggggagtgtcgtgtccgaacacctgcatatcaaca |
38568925 |
T |
|
| Q |
223 |
tctttgcagctataccaaacgagctgtacttatgggatgaatgagatttttctttaatttgtagaataaattttcagttacatgatgatg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568924 |
tctttgcagctataccaaacgagctgtacttatgggatgaatgagatttttctttaatttgtagaataaattttcagttacatgatgatg |
38568835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 38527695 - 38527615
Alignment:
| Q |
39 |
tcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaagtgaccaaggtaacataaa |
119 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| ||||||| || |||| || |||||| |||||||| |||||| |
|
|
| T |
38527695 |
tcggtcaaatgattgatagttttggtagtaaccaaagtaacaccaccgatgttgtagaacaagtgtccaaggtatcataaa |
38527615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University