View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19649_high_9 (Length: 309)
Name: NF19649_high_9
Description: NF19649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19649_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 10381429 - 10381175
Alignment:
| Q |
12 |
aacaatataggcatgaacttgattaatcatcttaggcaggcagagcaacaatnnnnnnntacaagagttcgaccaagtatagattggcatcatacgaagt |
111 |
Q |
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| T |
10381429 |
aacaaaataggcatgaacttgattaatcatcttaggcaggcagagcaacaataaaaaaatacaagagttcgaccaagtatagattggcatcatacgaagt |
10381330 |
T |
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| Q |
112 |
aaagattatttataaaagcaatcagcagcagcagcagtggtttgtatatacatggataggtaggatcacttccacttcctgaacatgccatgctttccaa |
211 |
Q |
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| T |
10381329 |
aaagattatttataaaagcaatcagcagcagcag---tggtttgtatatacatggataggtaggatcacttccacttcctgaacatgccatgctttccaa |
10381233 |
T |
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| Q |
212 |
actttccgtgcttaaatttcccgtgcttgccgaattttccatgcttgaacttcccatg |
269 |
Q |
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| T |
10381232 |
actttccatgtttaaatttcccgtgcttgccgaattttccatgcttgaacttcccatg |
10381175 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 2365563 - 2365501
Alignment:
| Q |
226 |
aatttcccgtgcttgccgaattttccatgcttg---aacttcccatgcttgaacttcccatga |
285 |
Q |
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| T |
2365563 |
aattttccatgcttgccgaattttccatgtttgccaaatttcccatgcttaaacttcccatga |
2365501 |
T |
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