View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1964_high_2 (Length: 202)
Name: NF1964_high_2
Description: NF1964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1964_high_2 |
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| [»] chr2 (10 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 32174391 - 32174585
Alignment:
| Q |
8 |
cagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaa |
107 |
Q |
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| T |
32174391 |
cagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaa |
32174490 |
T |
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| Q |
108 |
gcctgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtc |
202 |
Q |
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| T |
32174491 |
gcctgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtc |
32174585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 32110434 - 32110625
Alignment:
| Q |
11 |
aggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaagcc |
110 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| | |
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| T |
32110434 |
aggtagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagtc |
32110533 |
T |
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| Q |
111 |
tgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtc |
202 |
Q |
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| T |
32110534 |
tgtctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtc |
32110625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 32207026 - 32206835
Alignment:
| Q |
11 |
aggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaagcc |
110 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| |
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| T |
32207026 |
aggtagttaacaaccaattgcttcaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggtcttagcagagcaggatcaagct |
32206927 |
T |
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| Q |
111 |
tgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtc |
202 |
Q |
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| T |
32206926 |
tgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaacagtcctgaaagtgtc |
32206835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 32212101 - 32211910
Alignment:
| Q |
11 |
aggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaagcc |
110 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
32212101 |
aggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttaatagagcaggatcaagcc |
32212002 |
T |
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| Q |
111 |
tgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtc |
202 |
Q |
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| T |
32212001 |
tttctttgtgatttgttgtgacaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcccgaaagtgtc |
32211910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 32118695 - 32118889
Alignment:
| Q |
8 |
cagaggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaa |
107 |
Q |
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||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||| |
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| T |
32118695 |
cagaggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggtcttaatagagcaggatcaa |
32118794 |
T |
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| Q |
108 |
gcctgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||| |
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| T |
32118795 |
gcctgtctttgtgatttgttgtgaatacaattatgtgttcttctccgcagcatgaccaaagaccatcaacagcattcaatagtcctgaaagtgtc |
32118889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 32156618 - 32156809
Alignment:
| Q |
11 |
aggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaagcc |
110 |
Q |
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|||||||| | || ||||| |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||| |
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| T |
32156618 |
aggtagttaataatcaatttcttaaaagcagaaaagttgcaatatgacaagtgaatctgcttgtctattctaccaggccttaatagagcaggatcaagcc |
32156717 |
T |
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| Q |
111 |
tgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtc |
202 |
Q |
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| T |
32156718 |
tttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtc |
32156809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 32157739 - 32157919
Alignment:
| Q |
22 |
aaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaagcctgtctttgtga |
121 |
Q |
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| T |
32157739 |
aaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttaatagagcaggatcaagcctgtctttgtga |
32157838 |
T |
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| Q |
122 |
tttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtc |
202 |
Q |
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| T |
32157839 |
tttgttgtgaaaacaattatgtgttcttctccacagcacgaccagagaccatctgtcgcattcaatagtcccgaaagtgtc |
32157919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 32182480 - 32182671
Alignment:
| Q |
11 |
aggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaagcc |
110 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
32182480 |
aggtagttaacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagcc |
32182579 |
T |
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| Q |
111 |
tgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtc |
202 |
Q |
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| T |
32182580 |
tttctttgtgatttgttgtgaaaacaattatgtgttcctctccacaacatgaccaaagaccatctgtcgcattcaatagtcctgaaagtgtc |
32182671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 32152545 - 32152639
Alignment:
| Q |
11 |
aggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatc |
105 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||| |
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| T |
32152545 |
aggtagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaaatgaatttgcttgtccattttaccaggccttaacagagcatgatc |
32152639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 2821222 - 2821156
Alignment:
| Q |
11 |
aggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtcca |
77 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2821222 |
aggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca |
2821156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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