View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1964_low_1 (Length: 969)

Name: NF1964_low_1
Description: NF1964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1964_low_1
NF1964_low_1
[»] chr1 (20 HSPs)
chr1 (199-945)||(12884816-12885582)
chr1 (206-470)||(12921789-12922053)
chr1 (199-470)||(12955999-12956271)
chr1 (199-448)||(12914491-12914740)
chr1 (199-441)||(12950243-12950485)
chr1 (199-441)||(12942585-12942827)
chr1 (19-129)||(12885647-12885757)
chr1 (199-489)||(12992219-12992510)
chr1 (50-129)||(12942445-12942524)
chr1 (208-398)||(12893672-12893862)
chr1 (50-129)||(12950103-12950182)
chr1 (33-129)||(12922143-12922239)
chr1 (50-129)||(12955862-12955941)
chr1 (260-396)||(12997910-12998045)
chr1 (517-631)||(12992560-12992675)
chr1 (556-633)||(12914294-12914371)
chr1 (362-465)||(13000911-13001015)
chr1 (20-118)||(12915013-12915114)
chr1 (519-620)||(12942932-12943033)
chr1 (638-711)||(12921559-12921632)
[»] chr8 (4 HSPs)
chr8 (525-585)||(14071072-14071132)
chr8 (525-585)||(14073859-14073919)
chr8 (525-617)||(14069500-14069593)
chr8 (230-315)||(14073726-14073811)


Alignment Details
Target: chr1 (Bit Score: 618; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 199 - 945
Target Start/End: Complemental strand, 12885582 - 12884816
Alignment:
Q  199 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 298  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885582 ttttgtttgtatttgcagagtgtaccaaaggagtttatgaaaaaaggaagtaatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 12885483  T
Q  299 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 398  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885482 aagtcaattattatgagagtgttcatggctggaggttcaataaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 12885383  T
Q  399 taatctaatcgatgagagaaaatttgtgtttgatgtttcaattataggaagaacccattagttgtttgttctattgttctttaagatactaactagatgt 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  12885382 taatctaatcgatgagagaaaatttgtgtttgatgtttcaattataggaagaacccattagttgtttgttgtgttgttctttaagatactaactagatgt 12885283  T
Q  499 taagttgaacacatatttgctctacaattttaagcattgtattttggtactataaacatctgtgtttgatttgaatctaaggagaatcatgtcaaccttt 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12885282 taagttgaacacatatttgctctacaattttaagcattgtattttggtactataaacatctgtgtttgatttgaatctaaggagaatcatgtcagccttt 12885183  T
Q  599 ggattttttctctatgat----tgttggtaatgttttttgggaaacaaggcgtgaagatcttttagtaaatgcagatataatattttttactattagtta 694  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885182 ggattttttctctatgattgtttgttggtaatgttttttgggaaacaaggcgtgaagatcttttagtaaatgcagatataatattttttactattagtta 12885083  T
Q  695 aaggaattgtttgatgannnnnnnctccctttggtttgtttttgtctctt-taatatttatgatgatttcttagacaatatgacttacttgcctctgata 793  Q
    |||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12885082 aaggaattgtttgatgatttttttctccctttggtttgtttttgtctcttataatatttatgatgatttcttagacaatatgacttacttgcttctgata 12884983  T
Q  794 ttcatatttcatc--aaaccagtcaaaatagttacaagattttcttccttgtaaagaaatgagagtagtgttactacctaaacaaacaag---------- 881  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  12884982 ttcatatttcatcaaaaaccagtcaaaatagttacaagattttcttccttgtaaagaaatgagagtagtgttactacctaaacaaacaagatttctccct 12884883  T
Q  882 ---atgaagaggcaacgttacattgtttaccttaaacatacccaaataaatggcgaccagggttttc 945  Q
       |||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  12884882 taaatgaagaggcaacgttacattgtttaccttaaacatacccaaataaattgggaccggggttttc 12884816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 206 - 470
Target Start/End: Complemental strand, 12922053 - 12921789
Alignment:
Q  206 tgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaa 305  Q
    |||||||||||| |||||||||||||||||||||     ||||||||||||||||| ||||||||||| ||||  || ||||||||||||||||||||||    
T  12922053 tgtatttgcagactgtaccaaaggagtttatgaacggaggaagtcatgaaaatattttggagttgaaagtggggggacagtcatggttcgtaaaagtcaa 12921954  T
Q  306 ttattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctttaatcta 405  Q
    |||||| ||||||||||   |||| ||||| |||||||| ||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||  ||    
T  12921953 ttattacgagagtgttcggagctgcaggtttagtaaaggttggagaaaattcatgaaagcatgcaaagtggagatcggagatacttgtctctttaagtta 12921854  T
Q  406 atcgatgagagaaaatttgtgtttgatgtttcaattataggaagaacccattagttgtttgttct 470  Q
    || |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  12921853 attgatgagagaaaatttgtgtttgatgtttcagttataggatgaatccattagttgtttgttct 12921789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 199 - 470
Target Start/End: Original strand, 12955999 - 12956271
Alignment:
Q  199 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 298  Q
    |||| ||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12955999 ttttgtttgtatttgcagagtgtaccaaaggagtttatgaaaagaggatgtcatgaaaatattgtggagttgaaaatggggagaaagtcatggttcgtaa 12956098  T
Q  299 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 398  Q
    |||| || ||||| |||||| ||  |||||| |||||||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||| |    
T  12956099 aagtgaactattacgagagtatttgtggctgtaggttcagtaaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctcct 12956198  T
Q  399 taatctaatcgatgagagaaaatttgtgtttgatgtttcaattatagg-aagaacccattagttgtttgttct 470  Q
    |||  | || |||||  ||||||||||||||||||||||||||  ||| ||||| ||||||| ||||||||||    
T  12956199 taagttgattgatgaacgaaaatttgtgtttgatgtttcaattgcaggaaagaatccattagctgtttgttct 12956271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 199 - 448
Target Start/End: Complemental strand, 12914740 - 12914491
Alignment:
Q  199 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 298  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||  || || |||||||||||||||||||||||||||| |||||||||||||| ||||    
T  12914740 ttttgtttgtatctgcagtgtgtaccaaaggagtttatgaaaaaaggatgtaatgaaaatattgtggagttgaaaatggggagaaagtcatggtttgtaa 12914641  T
Q  299 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 398  Q
    ||||||||| ||||  |||| ||  |||||| |||||||||||||| |||||| |||||||| ||| | |||||||||||||||||||||||||||| ||    
T  12914640 aagtcaatttttatcggagtctttgtggctgtaggttcagtaaaggttggagacaatttatgaaagcaggcaaagtggagattggagatacttgtctttt 12914541  T
Q  399 taatctaatcgatgagagaaaatttgtgtttgatgtttcaattataggaa 448  Q
    |||  |||| |||||||| |||||||||||||||||||||||| ||||||    
T  12914540 taagttaattgatgagaggaaatttgtgtttgatgtttcaattgtaggaa 12914491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 199 - 441
Target Start/End: Original strand, 12950243 - 12950485
Alignment:
Q  199 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 298  Q
    |||| ||||||||||||| |||| |||||||||||||||||||   || || ||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  12950243 ttttgtttgtatttgcagggtgtgccaaaggagtttatgaaaagaggatgtaatgaaaatattgtggagttaaaaatggggagaaagtcatggtttgtaa 12950342  T
Q  299 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 398  Q
    |||||||||||||||||||| |||||||||| || |||||||| ||||||| |||||||||| ||| |||||||||| |||||||||| |||||||||||    
T  12950343 aagtcaattattatgagagtattcatggctgcagattcagtaagggatggacaaaatttatgaaagcatgcaaagtgaagattggagacacttgtctctt 12950442  T
Q  399 taatctaatcgatgagagaaaatttgtgtttgatgtttcaatt 441  Q
    ||   |||| ||||| || ||||||||||||||||||||||||    
T  12950443 taggttaattgatgaaaggaaatttgtgtttgatgtttcaatt 12950485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 199 - 441
Target Start/End: Original strand, 12942585 - 12942827
Alignment:
Q  199 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 298  Q
    |||| ||||||||||||||||||||||||||||||||||||||   || || |||||||||| ||||| |||||||||||  |||||||||||| |||||    
T  12942585 ttttgtttgtatttgcagagtgtaccaaaggagtttatgaaaaggggatgtaatgaaaatatcgtggaattgaaaatggggggaaagtcatggtacgtaa 12942684  T
Q  299 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 398  Q
    |||| || |||||||| ||| ||  |||||| |||||| ||||||| |||||| |||||||| ||| ||||||||||||||||||||||| |||||||||    
T  12942685 aagtgaactattatgatagtatttgtggctgtaggttcggtaaaggttggagacaatttatgaaagcatgcaaagtggagattggagatatttgtctctt 12942784  T
Q  399 taatctaatcgatgagagaaaatttgtgtttgatgtttcaatt 441  Q
    |||  | || ||||||||||  ||| |||||||||||||||||    
T  12942785 taagttgattgatgagagaatttttttgtttgatgtttcaatt 12942827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 12885757 - 12885647
Alignment:
Q  19 agattagatactaccattttgtgtttatgtatgtacagaaggtcgtgatgtgatgaagcataacacattgaaggttttggtgaagaacaaagctccggta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885757 agattagatactaccattttgtgtttatgtatgtacagaaggtcgtgatgtgatgaagcataacacattgaaggttttggtgaagaacaaagctccggta 12885658  T
Q  119 ggattaattac 129  Q
    |||||||||||    
T  12885657 ggattaattac 12885647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 199 - 489
Target Start/End: Original strand, 12992219 - 12992510
Alignment:
Q  199 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 298  Q
    |||| |||||||||||||| ||| |||||||||||||||||||   |||||||||||||  || ||||||||||||||||  ||   |||||||  ||||    
T  12992219 ttttgtttgtatttgcagaatgttccaaaggagtttatgaaaagaggaagtcatgaaaactttctggagttgaaaatggggggacgatcatggtctgtaa 12992318  T
Q  299 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 398  Q
    |||| ||||||||||| ||| ||||||| |  || |||  |  ||| |||||| |||| ||  |||||||||||||||||||||||||||||  ||||||    
T  12992319 aagtgaattattatgatagtattcatggttatagattctctggaggttggagacaattcataaaagaatgcaaagtggagattggagatactcttctctt 12992418  T
Q  399 taatctaatcgatgagagaaaatttgtgtttgatgtttcaattatagg-aagaacccattagttgtttgttctattgttctttaagatacta 489  Q
    |||  | || |||||||| || ||||||||||||||||||||| |||| || || || |||| || |||||||||||||||||||| |||||    
T  12992419 taagttgattgatgagagcaagtttgtgtttgatgtttcaattgtaggaaaaaatcccttagctgcttgttctattgttctttaaggtacta 12992510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 12942445 - 12942524
Alignment:
Q  50 tgtacagaaggtcgtgatgtgatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 129  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||    
T  12942445 tgtacagaaggtcctgatgtgatgaagcataacacattcaaggttatggtgaagaacaatgccccggtaggattaattac 12942524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 208 - 398
Target Start/End: Complemental strand, 12893862 - 12893672
Alignment:
Q  208 tatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaatt 307  Q
    |||||||||  ||||||||| || ||||||||||   || ||||||||||| |||||||||||||||| || | | | ||||||||| ||||||| ||||    
T  12893862 tatttgcaggatgtaccaaatgaatttatgaaaagaggatgtcatgaaaatcttgtggagttgaaaatagggatacaatcatggttcataaaagtgaatt 12893763  T
Q  308 attatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 398  Q
    |||||   ||| | | |||||| || ||| ||||||| |||||||| ||| ||||| | ||||||||| || ||||| |||||||||||||    
T  12893762 attatcctagtatccgtggctgtagattcggtaaaggttggagaaattttgtggaaaattgcaaagtgaagtttggaaatacttgtctctt 12893672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 12950103 - 12950182
Alignment:
Q  50 tgtacagaaggtcgtgatgtgatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 129  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||    
T  12950103 tgtacagaaggtcctaatgtgatgaagcataacacatttaaggttttggtgaagaacacatccccggtaggattaattac 12950182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 12922239 - 12922143
Alignment:
Q  33 cattttgtgtttatgtatgtacagaaggtcgtgatgtgatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 129  Q
    ||||||||||||||| |||||||||||||||||||  || | |||||||||| || |||||| |||||||||| | || ||||||||||||||||||    
T  12922239 cattttgtgtttatgcatgtacagaaggtcgtgattggaaggagcataacacgttcaaggttatggtgaagaatagagttccggtaggattaattac 12922143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 12955862 - 12955941
Alignment:
Q  50 tgtacagaaggtcgtgatgtgatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 129  Q
    ||||||||||||| ||||||||||||||   | ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  12955862 tgtacagaaggtcctgatgtgatgaagccatatacattcaaggttttggtgaagaacacagctccggtaggattaattac 12955941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 260 - 396
Target Start/End: Original strand, 12997910 - 12998045
Alignment:
Q  260 ttgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttat 359  Q
    |||||||||||||||||||  || | |||||||| |||||||| | |||||||   ||| ||| ||| ||   |||||||||||| |||| |||||||||    
T  12997910 ttgtggagttgaaaatgggg-gacaatcatggtttgtaaaagtgatttattatcctagtattcgtggttgtttgttcagtaaaggttggataaaatttat 12998008  T
Q  360 ggaagaatgcaaagtggagattggagatacttgtctc 396  Q
    ||||||| |||||||||| |||||| |||||||||||    
T  12998009 ggaagaaagcaaagtggaaattggaaatacttgtctc 12998045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 517 - 631
Target Start/End: Original strand, 12992560 - 12992675
Alignment:
Q  517 gctctacaattttaagcattgtattttggtactataaacatctgtgtttgatttgaatctaaggagaatcatg-tcaacctttggattttttctctatga 615  Q
    ||||||| ||||||||| |||||||||| |  | ||||| ||| ||||| ||||||||||||| |  |||||| ||||||||||||||||| || |||||    
T  12992560 gctctacgattttaagctttgtattttgttcttgtaaacttctatgtttcatttgaatctaagcaacatcatgatcaacctttggatttttactatatga 12992659  T
Q  616 ttgttggtaatgtttt 631  Q
    ||||| ||||||||||    
T  12992660 ttgtttgtaatgtttt 12992675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 633
Target Start/End: Complemental strand, 12914371 - 12914294
Alignment:
Q  556 atctgtgtttgatttgaatctaaggagaatcatgtcaacctttggattttttctctatgattgttggtaatgtttttt 633  Q
    |||||| |||||||| || |||||  | ||| |||||||||||||||||||  |||||||||||||||||||||||||    
T  12914371 atctgtatttgattttaacctaagaggtatcgtgtcaacctttggatttttgttctatgattgttggtaatgtttttt 12914294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 362 - 465
Target Start/End: Complemental strand, 13001015 - 13000911
Alignment:
Q  362 aagaatgcaaagtggagattggagatacttgtctctttaatctaatcgatgagagaaaatttgtgtttgatgtttcaattatag-gaagaacccattagt 460  Q
    ||||||||||||||||||||    ||||||||||||| ||  | || ||||||| ||||||||||||| ||||||||||| |||  |||||||||||||     
T  13001015 aagaatgcaaagtggagattctccatacttgtctcttgaagttgattgatgagaaaaaatttgtgtttaatgtttcaattgtagaaaagaacccattagc 13000916  T
Q  461 tgttt 465  Q
    |||||    
T  13000915 tgttt 13000911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 12915114 - 12915013
Alignment:
Q  20 gattagatactaccattttgtgtttatgtatgtacagaag---gtcgtgatgtgatgaagcataacacattgaaggttttggtgaagaacaaagctccgg 116  Q
    |||||| ||||  ||||||||||||||| |||||||||||   |||||||||||| | ||||||| ||||| ||||||||  ||||||||||| | ||||    
T  12915114 gattaggtactgtcattttgtgtttatgcatgtacagaagaaggtcgtgatgtgaaggagcataagacattcaaggttttcttgaagaacaaaaccccgg 12915015  T
Q  117 ta 118  Q
    ||    
T  12915014 ta 12915013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 519 - 620
Target Start/End: Original strand, 12942932 - 12943033
Alignment:
Q  519 tctacaattttaagcattgtattttggtactataaacatctgtgtttgatttgaatctaaggagaatcatgtcaacctttggattttttctctatgattg 618  Q
    |||||||| ||||||| |||||||||||| | ||||||| ||| ||||||||||| ||||| || ||  ||||| |||| |||| |||  ||||||||||    
T  12942932 tctacaatattaagcaatgtattttggtattgtaaacatttgtatttgatttgaacctaagaagtatattgtcagccttcggatatttgttctatgattg 12943031  T
Q  619 tt 620  Q
    ||    
T  12943032 tt 12943033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 711
Target Start/End: Complemental strand, 12921632 - 12921559
Alignment:
Q  638 aacaaggcgtgaagatcttttagtaaatgcagatataatattttttactattagttaaaggaattgtttgatga 711  Q
    |||||||| ||||||| | |||||| ||||| ||||  ||||||||||||||| ||||| ||| ||||||||||    
T  12921632 aacaaggcttgaagatatattagtacatgcaaatatgttattttttactattatttaaaagaactgtttgatga 12921559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 525 - 585
Target Start/End: Original strand, 14071072 - 14071132
Alignment:
Q  525 attttaagcattgtattttggtactataaacatctgtgtttgatttgaatctaaggagaat 585  Q
    |||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||| |||||    
T  14071072 attttaagcattgtattttgttaccataaacatttgtatttgatttgaatctaagtagaat 14071132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 525 - 585
Target Start/End: Original strand, 14073859 - 14073919
Alignment:
Q  525 attttaagcattgtattttggtactataaacatctgtgtttgatttgaatctaaggagaat 585  Q
    |||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||| |||||    
T  14073859 attttaagcattgtattttgttaccataaacatttgtatttgatttgaatctaagtagaat 14073919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 525 - 617
Target Start/End: Original strand, 14069500 - 14069593
Alignment:
Q  525 attttaagcattgtattttggtactataaacatctgtgtttgatttgaatctaaggagaatcat-gtcaacctttggattttttctctatgatt 617  Q
    ||||||||||||| |||||| ||| |||||||| ||  ||| ||||||||||||| |||||  | ||||||||||| |||||| ||||||||||    
T  14069500 attttaagcattgcattttgttacaataaacatttgcatttaatttgaatctaagtagaattttagtcaacctttgaatttttgctctatgatt 14069593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 14073726 - 14073811
Alignment:
Q  230 agtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaattattatgag 315  Q
    |||||||||||||  ||  | |||||||||||||| ||||||||||||   || | |||||||||||||||||||| | |||||||    
T  14073726 agtttatgaaaaagggatcttatgaaaatattgtgtagttgaaaatggagggataatcatggttcgtaaaagtcaaattttatgag 14073811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University