View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1964_low_2 (Length: 397)
Name: NF1964_low_2
Description: NF1964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1964_low_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 32175020 - 32174659
Alignment:
| Q |
19 |
gaaacgcggttacttgttgtttggtccacctggtactggaaagtctagcttgattgctgccatggctaactatctcaactatgatatctatgacttggat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
32175020 |
gaaacgcggttacttgttgtttggtccaccttgtactggaaagtctagcttgattgctgccatggctaactatctcaagtatgatatctatgacttggat |
32174921 |
T |
|
| Q |
119 |
ctcactgatgtacaagataataagcgcttgaagcaacttattcttgacattcccaagcgttctatacttgtgatagaggatattgattgcactataaatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
32174920 |
ctcactgatgtacaagataataagcgcttgaagcaacttattcttgacattcccaagcgttctatactagtgatagaggatattgattgcactataaatt |
32174821 |
T |
|
| Q |
219 |
tgcagaaccgagaagaagataaagacgtggttgataatggatacaataaggtatatatcattcttcaaatatatcattaatatttgggtttcattcatac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
32174820 |
tgcagaaccgagaagaagataaagacgtggttgataatggatacaataaggtatatatttttcttcaaatatatcattaatctttgggtttcattcatac |
32174721 |
T |
|
| Q |
319 |
taaaatatcattgggatgcataagaacaagaaaagatttagaagtatatgagcgtacatgat |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32174720 |
taaaatatcattgggatgcataagaacaagaaaagatttagaagtatatgagcgtacatgat |
32174659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 32183059 - 32182707
Alignment:
| Q |
19 |
gaaacgcggttacttgttgtttggtccacctggtactggaaagtctagcttgattgctgccatggctaactatctcaactatgatatctatgacttggat |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32183059 |
gaaacgcggttacttgttgtatggtccacctggtactggaaagtctagcttgattgcagccatggctaactatctcaactatgatatctatgacttggat |
32182960 |
T |
|
| Q |
119 |
ctcactgatgtacaagataataagcgcttgaagcaacttattcttgacattcccaagcgttctatacttgtgatagaggatattgattgcactataaatt |
218 |
Q |
| |
|
||||| |||||| ||||||||| |||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32182959 |
ctcaccgatgtaggggataataagaccttgaagcaacttattctcagcatgtccaaccgtgctatacttgtgatagaggatattgattgcactataaatt |
32182860 |
T |
|
| Q |
219 |
tgcagaaccgagaagaagataaagacgtggttgataatggatacaataaggtatatatcattcttcaaatatatcattaatatttgggtttcattcatac |
318 |
Q |
| |
|
||||||||||||||||||| ||||| || ||| |||||||| |||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
32182859 |
tgcagaaccgagaagaagagaaagaagttgttaataatggagacaataaggtatatatttttcttcaaatataccattaatatttgagtttcattcatac |
32182760 |
T |
|
| Q |
319 |
taaaatatcattgggatgcataagaacaagaaaagatttagaagtatatgagc |
371 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
32182759 |
taaaatgtcattgggatgcataaaaactagaaaagatttagaagtatatgagc |
32182707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 32119371 - 32119073
Alignment:
| Q |
19 |
gaaacgcggttacttgttgtttggtccacctggtactggaaagtctagcttgattgctgccatggctaactatctcaactatgatatctatgacttggat |
118 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32119371 |
gaaacgcggttacttgttgtacggtcctcctggtactggaaagtctagcttgattgcagccatggctaactatctcaactatgatatctatgacttggat |
32119272 |
T |
|
| Q |
119 |
ctcactgatgtacaagataataagcgcttgaagcaacttattcttgacattcccaagcgttctatacttgtgatagaggatattgattgcactataaatt |
218 |
Q |
| |
|
|||||| ||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
32119271 |
ctcactaatgtagaggataataagagcttgaagcaacttattcttgacattcccaatcgttctatacttgtgatagaggatattgattgcaatataaatt |
32119172 |
T |
|
| Q |
219 |
tgcagaaccgagaagaagataaagacgtggttgataatggatacaataaggtatatatcattcttcaaatatatcattaatatttgggtttcattcatac |
318 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||| |||||||||||| || || |||||||||||||| || |||| ||||||||||||| |
|
|
| T |
32119171 |
tgcagaaccgagaagaagagaaagaagt------taatggagacaataaggtatgcatttctcgtcaaatatatcattcatctttgagtttcattcatac |
32119078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 272
Target Start/End: Original strand, 32205806 - 32206057
Alignment:
| Q |
21 |
aacgcggttacttgttgtttggtccacctggtactggaaagtctagcttgattgctgccatggctaactatctcaactatgatatctatgacttggatct |
120 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32205806 |
aacgcggttacttgttgtacggtcctcctggtactggaaagtctagcttgattgcagccatggctaactatctcaactatgacatctatgacttggatct |
32205905 |
T |
|
| Q |
121 |
cactgatgtacaagataataagcgcttgaagcaacttattcttgacattcccaagcgttctatacttgtgatagaggatattgattgcactataaatttg |
220 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| |||||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32205906 |
cactgacgtacaagataataagatcttgaagcagcttattcttggtatgtccaaccgttctatacttgtgatagaggatatcgattgcactataaatttg |
32206005 |
T |
|
| Q |
221 |
cagaaccgagaagaagataaagacgtggttgataatggatacaataaggtat |
272 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32206006 |
caaaaccgagaagaagataaagacgtggttgataatggatacaataaggtat |
32206057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 32157343 - 32157035
Alignment:
| Q |
19 |
gaaacgcggttacttgttgtttggtccacctggtactggaaagtctagcttgattgctgccatggctaactatctcaactatgatatctatgacttggat |
118 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32157343 |
gaaacgcggttacttgttgtatggccctcctggtactggaaagtctagcttgattgcagccatggctaactatctcaactatgatatctatgacttggat |
32157244 |
T |
|
| Q |
119 |
ctcactgatgtacaagataataagcgcttgaagcaacttattcttgacattcccaagcgttctatacttgtgatagaggatattgattgcactataaatt |
218 |
Q |
| |
|
||||| |||||| | ||||||||| ||||||||||||| ||||| ||| |||| ||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32157243 |
ctcacagatgtagaggataataagagcttgaagcaactaattctcagcatgtccaaccgtgcgatacttgtgatagaggatattgattgcactataaatt |
32157144 |
T |
|
| Q |
219 |
tgcagaaccgagaagaagataaagacgtggttgataatggataca---ataaggtatatatcattcttcaaatatatcattaatatttgggtttcattca |
315 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||||||| ||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
32157143 |
tgcagaaccgagaagaagagaaagaagctgttgataatggagacaatgataaggtgtatatttttcttcaaatatatcattaatctttgagtttcattcg |
32157044 |
T |
|
| Q |
316 |
tactaaaat |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
32157043 |
tactaaaat |
32157035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 32158761 - 32158508
Alignment:
| Q |
19 |
gaaacgcggttacttgttgtttggtccacctggtactggaaagtctagcttgattgctgccatggctaactatctcaactatgatatctatgacttggat |
118 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
32158761 |
gaaacgcggttacttgttgtatggccctcctggtactggaaagtctagtttgattgcagccatggctaactatctcaactatgatatctatgatttagat |
32158662 |
T |
|
| Q |
119 |
ctcactgatgtacaagataataagcgcttgaagcaacttattcttgacattcccaagcgttctatacttgtgatagaggatattgattgcactataaatt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
32158661 |
ctcactaatgtacaagataataagcgcttgaagcaacttattcttgacatgtccaatcgttctatacttgtgatagaggatattgattgcaccgtaaaat |
32158562 |
T |
|
| Q |
219 |
tgcagaaccgagaagaagataaagacgtggttgataatggatacaataaggtat |
272 |
Q |
| |
|
|||| ||||||||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
32158561 |
tgcaaaaccgagaagaagatgaagaaattgttgataatggatacaataaggtat |
32158508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 21 - 296
Target Start/End: Original strand, 32211527 - 32211808
Alignment:
| Q |
21 |
aacgcggttacttgttgtttggtccacctggtactggaaagtctagcttgattgctgccatggctaactatctcaactatgatatctatgacttggatct |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32211527 |
aacgcggttacttgttgtatggtccacctggtactggaaagtctagcttgattgcagccatggctaactatctcaactatgatatctttgacttggatct |
32211626 |
T |
|
| Q |
121 |
cactgatgtacaagataataagcgcttgaagcaacttattcttgacattcccaagcgttctatacttgtgatagaggatattgattgcactataaatttg |
220 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| ||| || |||| ||||||||||||||||||||||| |||||||||||||| || || |
|
|
| T |
32211627 |
cactgatgtaggggataataagagcttgaagcaacttatcattggtatgtccaaccgttctatacttgtgatagaggacattgattgcactattaacctg |
32211726 |
T |
|
| Q |
221 |
cagaaccgagaagaag------ataaagacgtggttgataatggatacaataaggtatatatcattcttcaaatatatcatt |
296 |
Q |
| |
|
|||||||||||||||| || |||| || ||||||||||||||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
32211727 |
cagaaccgagaagaagatgaaaatgaagaagttgttgataatggatacaataaggtatgtatttttctttaaatatatcatt |
32211808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 32111349 - 32111096
Alignment:
| Q |
19 |
gaaacgcggttacttgttgtttggtccacctggtactggaaagtctagcttgattgctgccatggctaactatctcaactatgatatctatgacttggat |
118 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32111349 |
gaaacgcggttacttgttgtatggccctcctggtactggaaagtctagcttgattgcagccatggctaactatctcaactatgatatctatgacttggat |
32111250 |
T |
|
| Q |
119 |
ctcactgatgtacaagataataagcgcttgaagcaacttattcttgacattcccaagcgttctatacttgtgatagaggatattgattgcactataaatt |
218 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| | |||| | |
|
|
| T |
32111249 |
ctcactaatgtaggggataataagagcttgaagcaacttattctcagcatgtccaaccgttctatacttgtgatagaggatattgattgctccgtaaaat |
32111150 |
T |
|
| Q |
219 |
tgcagaaccgagaagaagataaagacgtggttgataatggatacaataaggtat |
272 |
Q |
| |
|
|||| ||||||||||||||| |||| || ||| ||||||| ||||||| |||| |
|
|
| T |
32111149 |
tgcaaaaccgagaagaagatgaagaagttgttcataatggccacaataatgtat |
32111096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 135 - 272
Target Start/End: Complemental strand, 32534448 - 32534305
Alignment:
| Q |
135 |
ataataagcgcttgaagcaacttattcttgacattcccaagcgttctatacttgtgatagaggatattgattgcactataaatttgcagaaccgagaaga |
234 |
Q |
| |
|
|||||||| ||| || | |||||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
32534448 |
ataataagagctcgaggaaacttattcttggcatgtccaaccgttctatacttgtgatagaggacattgattgcactattaacctgcagaaccgagaaga |
32534349 |
T |
|
| Q |
235 |
ag------ataaagacgtggttgataatggatacaataaggtat |
272 |
Q |
| |
|
|| || |||| || ||||||||||||||||||||||||| |
|
|
| T |
32534348 |
agatgaaaatgaagaagttgttgataatggatacaataaggtat |
32534305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 8043834 - 8043902
Alignment:
| Q |
19 |
gaaacgcggttacttgttgtttggtccacctggtactggaaagtctagcttgattgctgccatggctaa |
87 |
Q |
| |
|
|||||| ||||| ||||||| |||||| || || ||||| || ||||| ||||||||||| |||||||| |
|
|
| T |
8043834 |
gaaacgtggttatttgttgtatggtcctccaggaactgggaaatctagtttgattgctgctatggctaa |
8043902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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