View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1964_low_3 (Length: 371)
Name: NF1964_low_3
Description: NF1964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1964_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 24762835 - 24763192
Alignment:
| Q |
1 |
ccatattttaagtataagtccaaattatcttgttttcctcatggaatttagggagaaaaaatatattctgcaaaagagaagaaagatagggtagtgaaga |
100 |
Q |
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| T |
24762835 |
ccatattttaagtataaatccaaattatcttgttttcctcatggaatttagggagaaaaaatatattctgcaaaagagaagaaagatagggtagtgaaga |
24762934 |
T |
|
| Q |
101 |
agaagaa---aatgatggctttccatagctacccatggtcggcacctttttcttctaaccactagcattcaaatttaggat--aatcacatgaatcatac |
195 |
Q |
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| T |
24762935 |
agaagaagaaaatgatggctttccatagctacccatggtcggcacctttttcttctaaccactagcattcaaatttaggatgaaatcacatgaatcatac |
24763034 |
T |
|
| Q |
196 |
cttccctcctaactttattgtctctcatataaaaa-----taaaataaggtgattcggttggaactaagagaatggtggagctgcttggatctaccgcct |
290 |
Q |
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| T |
24763035 |
cttccctcataactttattgtctctcatataaaaataaaataaaataaggtgattcggttggaactaagaggatggtggagctgcttggatctgccacct |
24763134 |
T |
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| Q |
291 |
acaaaggttgagccaccgatctgtccgtcgtgagcctggttctgttgagctatggtga |
348 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24763135 |
acaaaggttgagccaccgatctgtccgccgtgagcctggttctgttgagctatggtga |
24763192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 347
Target Start/End: Complemental strand, 27913438 - 27913338
Alignment:
| Q |
247 |
ggttggaactaagagaatggtggagctgcttggatctaccgcctacaaaggttgagccaccgatctgtccgtcgtgagcctggttctgttgagctatggt |
346 |
Q |
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||||||| ||||||| ||| ||||| || |||||||||||||| | ||||| |||||| ||| |||| || |||||||||||||||||||||| |||| |
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| T |
27913438 |
ggttggacctaagaggatgatggagtggcgtggatctaccgcctgtagaggtttagccactgatttgtctgttgtgagcctggttctgttgagctgtggt |
27913339 |
T |
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| Q |
347 |
g |
347 |
Q |
| |
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| |
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| T |
27913338 |
g |
27913338 |
T |
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