View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1964_low_4 (Length: 307)
Name: NF1964_low_4
Description: NF1964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1964_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 6 - 288
Target Start/End: Complemental strand, 45507579 - 45507297
Alignment:
| Q |
6 |
gtgagaagaaactgggaactgatgagaaaacttttgtgcaaatattcagccaacggagtgccgcacagttggctgccataaatcatttttaccatgccaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45507579 |
gtgagaagaaactgggaactgatgagaaaacttttgtgcaaatattcagccaacggagtgccgcacagttggctgccataaatcatttttaccatgccaa |
45507480 |
T |
|
| Q |
106 |
ctatggtcattcattgaaaaaggtattctattctattctaaccactttaaatttatacccttaaccatagtatgtctctcactctttatcaaccgctact |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
45507479 |
ctatggtcattcattgaaaaaggtattctattctattctaaccactttaaatttatacccttaaccatagtctgtctctcactctttatcaaccgccact |
45507380 |
T |
|
| Q |
206 |
tatccaagttgaattcatcaggcaataaagaatgaaacatcagggaatttcgctcatgcacttttgacaattgtccaatgtgc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45507379 |
tatccaagttgaattcatcaggcaataaagaatgaaacatcagggaattttgctcatgcacttttgacaattgtccaatgtgc |
45507297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 50935213 - 50935087
Alignment:
| Q |
6 |
gtgagaagaaactgggaactgatgagaaaacttttgtgcaaatattcagccaacggagtgccgcacagttggctgccataaatcatttttaccatgccaa |
105 |
Q |
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|||| |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||| |||||||| || | | || ||| |||| || |
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| T |
50935213 |
gtgaaaagaaactcggaactgatgaaaagacttttgtccaaatattcagtgaaaggagtgccgcacatttggctgcaatcagttcttattatcatgacat |
50935114 |
T |
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| Q |
106 |
ctatggtcattcattgaaaaaggtatt |
132 |
Q |
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|||||||| |||||||| |||||||| |
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| T |
50935113 |
gtatggtcactcattgaagaaggtatt |
50935087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 26552878 - 26552932
Alignment:
| Q |
222 |
atcaggcaataaagaatgaaacatcagggaatttcgctcatgcacttttgacaat |
276 |
Q |
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|||||||| ||||||||||| |||| |||||||||| || |||||||||||||| |
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| T |
26552878 |
atcaggcagtaaagaatgaagcatccgggaatttcggtctcgcacttttgacaat |
26552932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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