View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1964_low_6 (Length: 251)
Name: NF1964_low_6
Description: NF1964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1964_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 39580851 - 39581074
Alignment:
| Q |
14 |
cagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580851 |
cagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgttt |
39580950 |
T |
|
| Q |
114 |
ggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgtta |
213 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580951 |
ggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgtta |
39581050 |
T |
|
| Q |
214 |
ctttggagcttttgctgaaaactg |
237 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39581051 |
ctttggagcttttgctgaaaactg |
39581074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 39521683 - 39521842
Alignment:
| Q |
20 |
gaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacg |
119 |
Q |
| |
|
|||||| |||| |||||| |||||||||||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
39521683 |
gaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacgtaccatgtaagtgttgcttggaacg |
39521782 |
T |
|
| Q |
120 |
gttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
179 |
Q |
| |
|
||||||||||| ||| |||| |||||| |||| || |||||||||||| |||||||||| |
|
|
| T |
39521783 |
gttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaa |
39521842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 39525193 - 39525339
Alignment:
| Q |
33 |
gaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgt |
132 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
39525193 |
gaaacggtgaattttgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatgtaggtgttgtttggtacggttttgaactcgt |
39525292 |
T |
|
| Q |
133 |
agaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
179 |
Q |
| |
|
| ||||| | |||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
39525293 |
ataaagattcggaatgaaatatccttgctgtttggtagagaggtgaa |
39525339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 39544489 - 39544636
Alignment:
| Q |
33 |
gaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgt |
132 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||| |||||||| |||||||||||||| ||||||||| ||||||||||||| ||| ||||| | |
|
|
| T |
39544489 |
gaaacattgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacataccatgtaggtgttgtttggtatggtagaaaattcat |
39544588 |
T |
|
| Q |
133 |
agaaagacttggaagggaatataattgctgtttggtagagaggtgaaa |
180 |
Q |
| |
|
|| |||||| |||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
39544589 |
aggaagactcggaatggaatatccttgctgtttggtagagaggtgaaa |
39544636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 39576328 - 39576487
Alignment:
| Q |
20 |
gaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacg |
119 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||| | |
|
|
| T |
39576328 |
gaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtatg |
39576427 |
T |
|
| Q |
120 |
gttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
179 |
Q |
| |
|
|| ||||||||| | || | ||| |||| || ||||||||||||| ||||||||| |
|
|
| T |
39576428 |
gtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaa |
39576487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 39511457 - 39511596
Alignment:
| Q |
40 |
tgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaaga |
139 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||| || ||||||||||| | ||||||||||||||| |||| |
|
|
| T |
39511457 |
tgaattttgcagtggaaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatataggtgttgtttgggatggttttgaattcgtaccaaga |
39511556 |
T |
|
| Q |
140 |
cttggaagggaatataattgctgtttggtagagaggtgaa |
179 |
Q |
| |
|
| |||| |||| || |||| ||||||||||||| |||| |
|
|
| T |
39511557 |
ttcggaacggaaaatccttgcagtttggtagagagatgaa |
39511596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 39544644 - 39544677
Alignment:
| Q |
200 |
tgattgacttgttactttggagcttttgctgaaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
39544644 |
tgattgacttgttactttggagctttttctgaaa |
39544677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 3331579 - 3331509
Alignment:
| Q |
45 |
tttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttgg |
115 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
3331579 |
tttgcagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgg |
3331509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University