View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1964_low_7 (Length: 227)
Name: NF1964_low_7
Description: NF1964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1964_low_7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 46130921 - 46130702
Alignment:
| Q |
8 |
attacacatcttcatttttacctgagtctgagcatcattacgacaagcaatttctcctagagcgtgcagagcagtcactacaacttctgacttcggatac |
107 |
Q |
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| T |
46130921 |
attacacatcttcatttttacctgagtctgagcatcattacgacaagcaatttctcctagagcgtgcagagcagtcactacaacttctgacttcggatac |
46130822 |
T |
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| Q |
108 |
ctttatcagggctcaagagaaaaagataacatagatgaagtcacctcgagaatatcagtgctactgaaaaaagacacaaatatattgtaatcactaatca |
207 |
Q |
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| T |
46130821 |
ctttatcagggcacaagagaaaaagataacaatgatgaagtcacctcgagaatatcagtgctaccgaaaaacgacacaaatatattgtaatcactaatca |
46130722 |
T |
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| Q |
208 |
gtcaaggacttacagtagta |
227 |
Q |
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| T |
46130721 |
gtcaaggacttacagtagta |
46130702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 46703735 - 46703517
Alignment:
| Q |
9 |
ttacacatcttcatttttacctgagtctgagcatcattacgacaagcaatttctcctagagcgtgcagagcagtcactacaacttctgacttcggatacc |
108 |
Q |
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||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||| | |||||||||| ||| ||||||| ||||| |||||||| |
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| T |
46703735 |
ttacacatctttattattacctgagtctgagcatcattaccagaagcaatttctcctagaacctgcagagcaggcacaacaacttttgactccggatacc |
46703636 |
T |
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| Q |
109 |
tttatcagggctcaagagaaaaagataacatagatgaagtcacctcgagaatatcagtgctactgaaaaaagacacaaatatattgtaatcactaatcag |
208 |
Q |
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| T |
46703635 |
tgtaccagggtacaagagaaaaagataacatggatgaagtcacctcgagaatatcagtgctaccgaaaaaagacacaaatatattgtaatcactaatcag |
46703536 |
T |
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| Q |
209 |
tcaaggacttacagtagta |
227 |
Q |
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| T |
46703535 |
tcaaggacttacagtagta |
46703517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 46124937 - 46124760
Alignment:
| Q |
11 |
acacatcttcatttttacctgagtctgagcatcattacgacaagcaatttctcctagagcgtgcagagcagtcactacaacttctgacttcggatacctt |
110 |
Q |
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||||||||| ||||||||||||||||||||||||| || | ||||||| ||||||||| | |||||| | ||| ||||||| ||||| ||||||||| |
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| T |
46124937 |
acacatctttatttttacctgagtctgagcatcatcaccagaagcaatatctcctagaatctccagagccggcacaacaacttttgactccggatacctg |
46124838 |
T |
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| Q |
111 |
tatcagggctcaagagaaaaag-ataacatagatgaagtcacctcgagaatatcagtgctactgaaaaaagacacaaa |
187 |
Q |
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|||||||| ||||| |||||| | ||||| ||| |||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
46124837 |
tatcaggggacaagaaaaaaagaaaaacatggattaagtcaccccgagaatatcagtgctaccgaaaaaagacacaaa |
46124760 |
T |
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