View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19650_high_1 (Length: 480)
Name: NF19650_high_1
Description: NF19650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19650_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 21844058 - 21844533
Alignment:
| Q |
1 |
ggggtgtgtgtgaatgttcatatagaagtcgaattcgaataattacttgtattgattaaatgatatgaatacaaaa-tatttcaattgttcattttattt |
99 |
Q |
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| T |
21844058 |
ggggtgtgtgtgaatgttcatatagaagtcgaattcgaataattacttgtattgattaaatgatatgaatacaaaagtatttcaattgtgcattttatat |
21844157 |
T |
|
| Q |
100 |
ttgaaaccattatagattgtacattttattgcactaaagatggtgggtttttctttcctttgaggaaaaagatggtggtttttgcaatatatattgaatg |
199 |
Q |
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| T |
21844158 |
ttggaaccattatatattgtacattttattgcactaaagatggtgggtttttctttcctttgagggaaaagatggtggtttttgcaatatatattgaatg |
21844257 |
T |
|
| Q |
200 |
atannnnnnnnaacgaaatatatatttggtgataattttccttnnnnnnnnn-tattgggtgatatttgcatagttatagctaaaattaggaaacaattt |
298 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21844258 |
ataattttt--aacgaaatatatatttggtgataattttccttaaaaaaaaaatattgggtgatatttgcatagttatagctaaaaataggaaacaattt |
21844355 |
T |
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| Q |
299 |
gaaaaatttaaatgctacaatacaaattaaaatttctatgccccagataaggttataatactagtggttgaaatttaaccactaccacatccttttcgtt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21844356 |
gaaaaatttaaatgctacaatacaaattaaaatttctatgccccagataaggttataatactagtggttgaaattgaaccactaccacatccttttcgtt |
21844455 |
T |
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| Q |
399 |
tgaatcgagtaagactacaatgaacgatacaaaccttacctcaagacattactgtcacacctttaatctgtgctgcta |
476 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| || ||||| |
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| T |
21844456 |
tgaatcgagtaagactacaatggacgatacaaaccctacctcaagacactactgtcacacctttaatctttgttgcta |
21844533 |
T |
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