View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19650_high_9 (Length: 247)
Name: NF19650_high_9
Description: NF19650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19650_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 52188902 - 52188678
Alignment:
| Q |
18 |
taacccacttggcaagaagaaaaatcagtatttatatcctaaattagcaagaggacagtgccattcatacacaaacataaatatcgaaatttaagatcat |
117 |
Q |
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| T |
52188902 |
taacccacttggcaagaagaaaaatcagtatttatatcctaaattagcaagaggacagtgccattcatacacaaacataaatatcgaaatttaagatcat |
52188803 |
T |
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| Q |
118 |
tgtttcgagtaagagcgtgatcttcctactgtcacacaaaaataggatttaatgaattgtgtctatgattttaagctcaattcaagaaataatatctatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52188802 |
tgtttcgagtaagagcgtgatcttcctactgtcacacaataataggatttaatgaattgtgtctatgattttaagctcaattcaagaaataatatctatg |
52188703 |
T |
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| Q |
218 |
tcacaatccacctgcctatgcttct |
242 |
Q |
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||||||||||| || ||||| |||| |
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| T |
52188702 |
tcacaatccacttgtctatgattct |
52188678 |
T |
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