View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19650_low_11 (Length: 223)
Name: NF19650_low_11
Description: NF19650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19650_low_11 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 35036634 - 35036427
Alignment:
| Q |
16 |
acataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcacatccatgaagtcaagtttg |
115 |
Q |
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| T |
35036634 |
acataccagacaagttgctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcacatccatgaagtcaagtttg |
35036535 |
T |
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| Q |
116 |
gtgccggcaggtttcttgttgcgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccat |
215 |
Q |
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| T |
35036534 |
gtgccggcaggtttcttgttgcgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccat |
35036435 |
T |
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| Q |
216 |
ccaaatcc |
223 |
Q |
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|||||||| |
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| T |
35036434 |
ccaaatcc |
35036427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 35020443 - 35020228
Alignment:
| Q |
2 |
aatggaagcaagtgacataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcacatcca |
101 |
Q |
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| T |
35020443 |
aatggaagcaagtgacataccatacaagtggctttgattgtagtatcagcatcacggccatctaaatct---tcatcaacggttgaaagcagcacatcca |
35020347 |
T |
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| Q |
102 |
tgaagtcaagtttggtgccg-gcaggtttcttgttgcgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatct |
200 |
Q |
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| T |
35020346 |
tgaaatc----ttgttcacgaccagaattcttcttatgtttgtgctgatcaagccaaacacaaacaaagtcatctaactcttttgctgttttcttcattt |
35020251 |
T |
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| Q |
201 |
gcttctgttttccatccaaatcc |
223 |
Q |
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| T |
35020250 |
gcttctgttttccatccaaatcc |
35020228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 35044644 - 35044558
Alignment:
| Q |
137 |
cgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatcc |
223 |
Q |
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| T |
35044644 |
cgtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatcc |
35044558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 35044764 - 35044697
Alignment:
| Q |
14 |
tgacataccagacaagtggctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaac |
81 |
Q |
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| T |
35044764 |
tgacataccagacacgtagttttgatagtagttccagcatcacgaccatcaatttcttgatcatcaac |
35044697 |
T |
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