View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19650_low_12 (Length: 202)
Name: NF19650_low_12
Description: NF19650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19650_low_12 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 10408 - 10264
Alignment:
| Q |
20 |
atatacggaataactaaatgtttgaatgaatgagataaatgctatgcaagcacaacaaaagtttgataatgacctctaggctgtatagaggagtctgaag |
119 |
Q |
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| T |
10408 |
atatacggaataactaaacgtttgaatgaatgagataaatggtatgcaagcagaacaaaagtttgataatgacctctaggctgtatagaggagtctgaag |
10309 |
T |
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| Q |
120 |
atgctgctgctggagccattgatagatgaaaaatgaatctgtcat |
164 |
Q |
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| T |
10308 |
atgctgctgccggagccattgatagatgaaaaatgaatctgtcat |
10264 |
T |
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Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 43051805 - 43051930
Alignment:
| Q |
39 |
gtttgaatgaatgagataaatgctatgcaagcacaacaaaagtttgataatgacctctaggctgtatagaggagtctgaagatgctgctgctggagccat |
138 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43051805 |
gtttgaatgaatgagataaatggtatgcaagcagaacaaaagtttgataatgacctctaggctgtatagaggagtctgaagatgctgctgccggagccat |
43051904 |
T |
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| Q |
139 |
tgatagatgaaaaatgaatctgtcat |
164 |
Q |
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| T |
43051905 |
tgatagatgaaaaatgaatctgtcat |
43051930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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