View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19650_low_3 (Length: 465)
Name: NF19650_low_3
Description: NF19650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19650_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Original strand, 29317920 - 29318364
Alignment:
| Q |
8 |
attattcttgatggtggttggagtcgcacattcctaacttttttacgacttcaactcatggtggtctaatcatctggattgtattggttatactccctta |
107 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29317920 |
attattcttggtggtggttggagacgcacattcctaacttttttacgacttcaactcatggtggtctaatcatctggtttgtattggttatactccctta |
29318019 |
T |
|
| Q |
108 |
taaaatcttgctttagtttttggtattgtttttagctttgcctgtaatatgtactcgctctgcttccttttaggcacaccttgaacttaaggggnnnnnn |
207 |
Q |
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| T |
29318020 |
taaaatcttgctttagtttttggtattgtttttagctttgcctgtaatatgtacttgctctgcttccttttaggcacaccttgagcttaaggggtttttt |
29318119 |
T |
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| Q |
208 |
naatctatttcggnnnnnnncctcttcnnnnnnnnn-gtcatttacatagatagatggtataatttttaaatcgnnnnnnntaatacttagttacctaac |
306 |
Q |
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| T |
29318120 |
taatctatttcgttttttttcctcttcaaaaaaaaaagtcatttacatagatagatggtataatttttaaatcgaaaaaaataatacttagttacctaac |
29318219 |
T |
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| Q |
307 |
aatggaagccaatataaaagtaatagcaggaagcatattgctcatggcagctgcaaaggttgccgttgtgtacttcatccccaaaaaatataaattctgg |
406 |
Q |
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| T |
29318220 |
aatggaagccaatataaaagtaatagcaggaagcatattgctcatggcagctgcaaaggttgccgttgtgtacttcatccccaaaaaatataaattctgg |
29318319 |
T |
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| Q |
407 |
tcaattaccggtctgtcaatgacaaaaaataaacattaaagttat |
451 |
Q |
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| T |
29318320 |
tcaattaccggtctgtcaatgacaaaaaataaacattaaagttat |
29318364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 24480930 - 24480773
Alignment:
| Q |
33 |
gcacattcctaac-ttttttacgacttcaactcatggtggtctaatcatctggattgtattggttatactcccttataaaatcttgctttagtttt-tgg |
130 |
Q |
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| T |
24480930 |
gcacattcctaacattttttacgacttcaattcctggtcttctaatgctctagtttgtatgggttatgctccgttgtaatgttttacttttgttttatgt |
24480831 |
T |
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| Q |
131 |
tattgtttttagctttgcctgtaatatgtactcgctctgcttccttttaggcacacctt |
189 |
Q |
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| T |
24480830 |
tattgtttttagctt-gtctgtaatgtatacttcttatgcttccttttaggcacacctt |
24480773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 411
Target Start/End: Complemental strand, 40215837 - 40215752
Alignment:
| Q |
326 |
gtaatagcaggaagcatattgctcatggcagctgcaaaggttgccgttgtgtacttcatccccaaaaaatataaattctggtcaat |
411 |
Q |
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| T |
40215837 |
gtaatagcaggaaggacattgaacatggcaactgcaaaagtagctgttgtatacttcattcccaaaaaatataaattttgatcaat |
40215752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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