View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19650_low_4 (Length: 382)
Name: NF19650_low_4
Description: NF19650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19650_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 367
Target Start/End: Original strand, 28862829 - 28863179
Alignment:
| Q |
6 |
atataatactggggtttgttgctgattgttgaagttactcatgttgatgatgatagaaaatatcaaa-gagttgttgaaagataagaaagataatggaat |
104 |
Q |
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| T |
28862829 |
atatgatactggggcttgttgctgattgttgaagttactcatgttgatgatgatagaaaatatcaaaagagttgttgaaagataagaaagataatggaat |
28862928 |
T |
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| Q |
105 |
tgtatgagatgatatcgtaaagtatagagggaataatgtgtgtgnnnnnnnnnnnnggtttaatttggataaacgcgttacaggtgagtaaggaaagagt |
204 |
Q |
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| T |
28862929 |
tgtatgagataatattgtaaagtatagagggaataatgtgtgtgtatatatatataggtttaatttggataaacgcgttacaggtgagt----------- |
28863017 |
T |
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| Q |
205 |
aaggaaagtgtaagacggagtttacaattaagattcagatacatacgctatgtgttttgatttgtgacacatttgtcgttccttattgtttatgtttcca |
304 |
Q |
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| T |
28863018 |
aaggaaagtgtaagacggagtttacaattgagattcagatacatacgctatgtgttttgatttgtgacacatttgtcgttccttattctttatgtttcca |
28863117 |
T |
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| Q |
305 |
aacatatattcaaggttttccacgcgtatgattccaaatattcagaattttctagattatatt |
367 |
Q |
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| T |
28863118 |
aacatatattcaaggttttccacgcgtatga-tccaaatattcagaattttctagattatatt |
28863179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 28865420 - 28865379
Alignment:
| Q |
6 |
atataatactggggtttgttgctgattgttgaagttactcat |
47 |
Q |
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|||| ||||||||||||||||||||||||| |||| |||||| |
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| T |
28865420 |
atatgatactggggtttgttgctgattgttaaagtgactcat |
28865379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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