View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19650_low_6 (Length: 361)
Name: NF19650_low_6
Description: NF19650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19650_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 103 - 331
Target Start/End: Complemental strand, 47218275 - 47218047
Alignment:
| Q |
103 |
ctgtttggatacgcgttttccagcctcaaacgcgagtctagatgttcaaacgccatttcaccatttttgaagatgtttgggtaactgcaaaagcgcttct |
202 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47218275 |
ctgtttggatacgcgtttttcagcctcaaacgtgagtctagatgttcaaatgccatttcaccatttttgaagatgtttgggtaactgcaaaagtgcttct |
47218176 |
T |
|
| Q |
203 |
accaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47218175 |
accaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatt |
47218076 |
T |
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| Q |
303 |
tccagctttacccttttttatctgctgcg |
331 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
47218075 |
tccagctttacccttttttatctgctgcg |
47218047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 24771497 - 24771439
Alignment:
| Q |
255 |
agcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatttccagctttac |
313 |
Q |
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|||||||||| || ||||||||||||||||| || ||||||||| |||||||||||||| |
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| T |
24771497 |
agcttctgcgtctattaaaatcaattctgcataaaccccaaattaatttccagctttac |
24771439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 103 - 331
Target Start/End: Complemental strand, 2175796 - 2175568
Alignment:
| Q |
103 |
ctgtttggatacgcgttttccagcctcaaacgcgagtctagatgttcaaacgccatttcaccatttttgaagatgtttgggtaactgcaaaagcgcttct |
202 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
2175796 |
ctgtttggatacgcgttttccaccctcaaacgtgagtctagatgttcaaacgccatttcaccattttttaagatgtttggataactgcaaaagcgcttct |
2175697 |
T |
|
| Q |
203 |
accaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2175696 |
accaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatt |
2175597 |
T |
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| Q |
303 |
tccagctttacccttttttatctgctgcg |
331 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
2175596 |
tccagctttacccttttttatctggtgcg |
2175568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 103 - 330
Target Start/End: Complemental strand, 20830829 - 20830604
Alignment:
| Q |
103 |
ctgtttggatacgcgttttccagcctcaaacgcgagtctagatgttcaaacgccatttcaccatttttgaagatgtttgggtaactgcaaaagcgcttct |
202 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20830829 |
ctgtttggatacgcgttttccagcctcaaacgcgagtctagatgttcaaacaccatttcaccatttttgaag--gtttgggtaactgcaaaagcgcttct |
20830732 |
T |
|
| Q |
203 |
accaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatt |
302 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20830731 |
accaaacgtgaatctagctccaaacccacctttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagcctcaaatttatt |
20830632 |
T |
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| Q |
303 |
tccagctttacccttttttatctgctgc |
330 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
20830631 |
tccagctttacccttttttatctgctgc |
20830604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 103 - 317
Target Start/End: Original strand, 36547541 - 36547755
Alignment:
| Q |
103 |
ctgtttggatacgcgttttccagcctcaaacgcgagtctagatgttcaaacgccatttcaccatttttgaagatgtttgggtaactgcaaaagcgcttct |
202 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36547541 |
ctgtttggatacgcgttttccaatcccaaaagcgagtttagagattcaaaagccatttcaccattttttaagatgtttgggtaactgcaaaagcgcttca |
36547640 |
T |
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| Q |
203 |
accaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatt |
302 |
Q |
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| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
36547641 |
atcagccgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgctaaaatcaattctgcaaaagccccaaatttgtt |
36547740 |
T |
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| Q |
303 |
tccagctttaccctt |
317 |
Q |
| |
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||||||||||||||| |
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| T |
36547741 |
tccagctttaccctt |
36547755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 42516464 - 42516422
Alignment:
| Q |
273 |
aatcaattctgcaaaagccccaaatttatttccagctttaccc |
315 |
Q |
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|||||||| |||| ||||||||||||||||||||| ||||||| |
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| T |
42516464 |
aatcaattatgcagaagccccaaatttatttccagttttaccc |
42516422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 98 - 321
Target Start/End: Original strand, 24045173 - 24045398
Alignment:
| Q |
98 |
agtaactgtttggatacgcgttttccagcctcaaacgcgagtctagatgttcaaacgccatttcaccatttttg--aagatgtttgggtaactgcaaaag |
195 |
Q |
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|||| |||||||| || ||||||||| || |||| |||||| |||| |||||| || |||||||||||||| |||||||||||||||||||||||| |
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| T |
24045173 |
agtacctgtttgggtatgcgttttccgaccccaaaagcgagtttagagattcaaaagcgatttcaccattttttttaagatgtttgggtaactgcaaaag |
24045272 |
T |
|
| Q |
196 |
cgcttctaccaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaa |
295 |
Q |
| |
|
|||||| | || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24045273 |
cgcttcaatcagtcgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaa |
24045372 |
T |
|
| Q |
296 |
atttatttccagctttaccctttttt |
321 |
Q |
| |
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|||| ||||||||||||||||||||| |
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| T |
24045373 |
atttgtttccagctttaccctttttt |
24045398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 14843990 - 14843909
Alignment:
| Q |
17 |
tatgcatcaccatggtggaccacccttcacatattgaatccaccatgccattctgccatggtggtgcaacggcctttattta |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
14843990 |
tatgcatcaccatggtggaccacccttcacatattgaatccaccatgccattctgccatggtggtgcagcgacctttattta |
14843909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 15576086 - 15576162
Alignment:
| Q |
255 |
agcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatttccagctttacccttttttatctgctgcg |
331 |
Q |
| |
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|||||||||| ||||||| |||||||||| || ||||||||| |||||||||||||| |||||| |||||||| |
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| T |
15576086 |
agcttctgcgactgttaatatcaattctgttgaaaccccaaattcgtttccagctttaccatttttttcctgctgcg |
15576162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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