View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19650_low_9 (Length: 262)
Name: NF19650_low_9
Description: NF19650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19650_low_9 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 42520 - 42273
Alignment:
| Q |
1 |
agaccgggcattaagacttatcttagaaaaaatctaaatattcggaaaaatccaagttccacttagaggatataaaaggctttatcatttatctataagt |
100 |
Q |
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| T |
42520 |
agacagggcattaagacttctcttagaaaaaatttaaatattcggaaaaatccaagtttcacttagaggatataaaaggttttatcatttatctataagt |
42421 |
T |
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| Q |
101 |
tgattttggaaggataagttagacacacaaaaagttagagtctcttcattaaattttaagattagaacagacctctttttgtagtttttaaatgtcaata |
200 |
Q |
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| T |
42420 |
tggttttgggaggatgagttacac-taaagaaaattaaagtctctcaattaaattttaagattagaacagacctttttttgtagtttttaaatgtcaata |
42322 |
T |
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| Q |
201 |
tcaagttag-tttattacacttaaaaggttaacaatattagatcaaact |
248 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
42321 |
tcaagttagtttttttacacttaaaaggttaacaatattagatcaaact |
42273 |
T |
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