View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19651_high_1 (Length: 916)
Name: NF19651_high_1
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Original strand, 53661160 - 53661653
Alignment:
| Q |
8 |
gacatcatcaactaaaatacaataagccagtaaaatttaaaagtaatcaatgtgagcttactccagtcttatctatcaaaagattagctgacttgaggtc |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53661160 |
gacagcatcaactaaaatacaataagccagtaaaatttaaaagtaatcaatgtgagcttactccagtcttatctatcaaaagattagctgacttgaggtc |
53661259 |
T |
|
| Q |
108 |
ccggtgtatgatatcattctgatgcaaatatttcatcccttcagaaacatcaatggctacttttagcaaagatggaagagcaaggacagttttctgttta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53661260 |
ccggtgtatgatatcattctgatgcaaatatttcatcccttcagaaacatcaatggctacttttagcaaagatggaagagcaaggacagttttctgttta |
53661359 |
T |
|
| Q |
208 |
tgaagaaggtcgtacatacttccaccagacaaatattctgagataaaaacaagttatattgaaatcgacattgctttttccaatacattgtcaaagtcat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53661360 |
tgaagaaggtcgtacatacttccaccagacaaatattctgagataaaaacaagttatattgaaatcgacaatgctttttccaatacattgtcaaagtcat |
53661459 |
T |
|
| Q |
308 |
aatcaataggaaaaatttaactaagaatatgtgacttagtaaatttgacctgtgacaaggcaaaggtttgggggttttgtacatgcaccaacaaatttga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53661460 |
aatcaataggaaaaatttaactaagaatatgtgacttagtaaatttgacctgtgacaaggcagaggtttgggggttttgtacatgcaccaacaaatttga |
53661559 |
T |
|
| Q |
408 |
caacattcctgtgctgaattttactgcaacaattcaattaaaataaatatattgaatatcaattacaatatattaaagaatattatcgtttctc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53661560 |
caacattcctgtgctgaattttactgcaacaattcaattaaaataaatatattgaatatcaattacaatatattaaagaatattatcgtttctc |
53661653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 566 - 898
Target Start/End: Original strand, 53661718 - 53662050
Alignment:
| Q |
566 |
aaacactattgaaaattccagagaaaaaaggcctcatggtaggggactgatgaatggaaagtgggatggaacgaaccttaggatatatacttcctgagaa |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53661718 |
aaacactattgaaaattccagagaaaaaaggcctcatggtaggggactgatgaatggaaagtgggatggaacgaaccttaggatatatacttcctgagaa |
53661817 |
T |
|
| Q |
666 |
aactccctatgtatattttcatccaaactctcttgcttcaggactttgatggctaaatcttgattacataatgtacctttgtacctgtgtcagctatcag |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53661818 |
aactccctatgtatattttcatccaaactctcttgcttcaggactttgatagctaaatcttgattacataatgtacctttgtacctgtgtcagctatcag |
53661917 |
T |
|
| Q |
766 |
taattcaacatatacttacccacaaacatatcaaagagatgaaatgatactactcacaaatcactgaacggtccagatgcaattttcttttcaaatctca |
865 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53661918 |
taattcaacatatacttacccacaaacatatcaaagagatgaaatgatactactcacaaatcactgaacggtccagatgcaattttcttttcaaatctca |
53662017 |
T |
|
| Q |
866 |
accaacttgcttcacttgttgagacgccatttt |
898 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
53662018 |
accaacttgcttcacttgttgagacgccgtttt |
53662050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 8450384 - 8450451
Alignment:
| Q |
380 |
ggttttgtacatgcaccaacaaatttgacaacattcctgtgctgaattttactgcaacaattcaatta |
447 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||| | |||||||| |
|
|
| T |
8450384 |
ggttttgtacaggcaccaataaatttgataacattcttgtgctgaattttactgcaatagttcaatta |
8450451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 9207957 - 9207854
Alignment:
| Q |
82 |
atcaaaagattagctgacttgaggtcccggtgtatgatatcattctgatgcaaatatttcatcccttcagaaacatcaatggctacttttagcaaagatg |
181 |
Q |
| |
|
|||| |||||| || | ||||||||||| ||| || |||| ||| || |||||||| ||||| || | ||||||||||||||||||||||| ||||||| |
|
|
| T |
9207957 |
atcagaagattggcagtcttgaggtccctgtgaataatattattttggtgcaaatagttcattcccttggaaacatcaatggctacttttagtaaagatg |
9207858 |
T |
|
| Q |
182 |
gaag |
185 |
Q |
| |
|
|||| |
|
|
| T |
9207857 |
gaag |
9207854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University