View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19651_high_15 (Length: 297)
Name: NF19651_high_15
Description: NF19651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19651_high_15 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 179890 - 180187
Alignment:
| Q |
1 |
tattttcaacaacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaatcaagttcaaattgtctcgcaaaaattttcgtgct |
100 |
Q |
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| T |
179890 |
tattttcaacaacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaatcacgttcaaattgtctagcaaaaattttcgtgct |
179989 |
T |
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| Q |
101 |
tggaaacgtcaagtcactaccctgcttgctggtatcgaagt-atgggtcacatagacggaaccacaccaattcaaacagaaactattatcaacaatggtg |
199 |
Q |
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| T |
179990 |
tggaaacgtcaagtcactaccctgcttgctggtatcgaagttatgggtcacatagacggaaccacaccaattcaaacagaaactattatcaacaacggtg |
180089 |
T |
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| Q |
200 |
tctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcc |
297 |
Q |
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| T |
180090 |
tctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacaaaggctgacatcatctcc |
180187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 1700283 - 1700571
Alignment:
| Q |
10 |
caacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaatcaagttcaaattgtctcgcaaaaattttcgtgcttggaaacgt |
109 |
Q |
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| T |
1700283 |
caacatggccaccaacccttccaacaccaaatcatctcttattctaaatgcctcaatcacgttcaaactgtctcgcaaaaatttccgtgcttggaaacgt |
1700382 |
T |
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| Q |
110 |
caagtcactaccctgcttgctggtatcgaagt-atgggtcacatagacggaaccacaccaattcaaacagaaactattatcaacaatggtgtctatgctc |
208 |
Q |
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| T |
1700383 |
caagtcactaccctgcttgctggtatcgaagttatgggtcacatagacggaaccacaccaattcaaacagaaactattatcaacaacggtgtctctgctc |
1700482 |
T |
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| Q |
209 |
ccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcc |
297 |
Q |
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| T |
1700483 |
ccaatcctgattacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacagcatctcc |
1700571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 5399261 - 5399324
Alignment:
| Q |
218 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacaga |
281 |
Q |
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| T |
5399261 |
aatacacaaattggttcactattgatcaactcatcatcaatcttcttatctcctctatgacaga |
5399324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 3540258 - 3540321
Alignment:
| Q |
218 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacaga |
281 |
Q |
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| T |
3540258 |
aatacacaaattggttcactattgaccaactcatcatcaatcttcttatctcctttatgacaga |
3540321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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